Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_B11
(1114 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 33 0.31
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296 32 0.71
06_03_1381 - 29754405-29754525,29754617-29754671,29755383-297554... 31 1.2
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 30 2.9
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105... 29 5.0
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 6.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 26 6.9
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 29 8.8
01_01_0796 + 6190931-6192745 25 9.6
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 656 PPPXXXGGGGGGXXXXXXXXXPPPPXPXXXXXXXXXXXXXXXXXXXXGGGGG 811
PP GGGGGG PPPP GGGGG
Sbjct: 72 PPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGG 123
Score = 29.1 bits (62), Expect = 6.6
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -2
Query: 810 PPPPPXXXXXXXXXXXXXXXXXXXXGXGGGGXXXXXXXXXPPPPPPXXXGGG 655
PPPPP G GGGG PPPP GGG
Sbjct: 56 PPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTS-----PPPPYSGGGG 102
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 425 PPXKXXGGGGAPPXQKRGGGWVKFFXGXPXKXGXPQXFFXFFXXS 291
PP GGGG Q+ GGG + P P +F F+ S
Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLP--YFPFYYYS 156
Score = 23.8 bits (49), Expect(2) = 1.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 575 PPPXXGGGGG 546
PPP GGGGG
Sbjct: 94 PPPYSGGGGG 103
>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
Length = 191
Score = 32.3 bits (70), Expect = 0.71
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 428 PPPXKXXGGGGAPPXQKRGGG 366
PPP G GG PP +RGGG
Sbjct: 96 PPPAPYYGNGGYPPPHQRGGG 116
>06_03_1381 -
29754405-29754525,29754617-29754671,29755383-29755440,
29755819-29755988,29756576-29756780
Length = 202
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 735 GXGGGGXXXXXXXXXPPPPPPXXXGGG 655
G GGGG PPPPP GGG
Sbjct: 6 GGGGGGAGEARGADAPPPPPVAAGGGG 32
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 656 PPPXXXGGGGGGXXXXXXXXXPPPPXP 736
PPP GGGG G PPP P
Sbjct: 16 PPPFGRGGGGAGYPRGHKQLYAPPPPP 42
>07_03_0587 +
19708841-19709282,19709693-19709883,19710429-19710568,
19710955-19711380,19711540-19712685,19712805-19712934,
19713257-19713492,19713575-19713710,19713793-19713869,
19714692-19714798,19714896-19714996
Length = 1043
Score = 29.5 bits (63), Expect = 5.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 428 PPPXKXXGGGGAPPXQKRGGGWV 360
PPP + GG + RGGGWV
Sbjct: 61 PPPQQADPGGAKTKKKARGGGWV 83
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -3
Query: 725 GGGXXXXXXXXXPPPPXXXXGGGXXXXXXXXXXXXXXXXXKKKKKXXGGX--PPPXXGGG 552
GGG PPP GG + GG PPP GGG
Sbjct: 344 GGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPPPYHGGG 403
Query: 551 GG 546
GG
Sbjct: 404 GG 405
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 25.8 bits (54), Expect(2) = 6.9
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 431 TPPPXKXXGGGGAPPXQKRGGGWVKFFXGXPXKXGXP 321
TPPP GG PP RG G V G P G P
Sbjct: 1173 TPPP-NAHGGVAPPPPPPRGHGGV---GGPPTPPGAP 1205
Score = 21.4 bits (43), Expect(2) = 6.9
Identities = 13/48 (27%), Positives = 14/48 (29%)
Frame = -3
Query: 689 PPPPXXXXGGGXXXXXXXXXXXXXXXXXKKKKKXXGGXPPPXXGGGGG 546
PPPP G + GG PPP GG G
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLG 1158
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 28.7 bits (61), Expect = 8.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 674 GGGGGGXXXXXXXXXPPPPXP 736
GGGGGG PPPP P
Sbjct: 22 GGGGGGGFSPTAAKPPPPPSP 42
>01_01_0796 + 6190931-6192745
Length = 604
Score = 24.6 bits (51), Expect(2) = 9.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 690 PPPPPPXXXGG 658
PPPPPP GG
Sbjct: 237 PPPPPPPAAGG 247
Score = 22.2 bits (45), Expect(2) = 9.6
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -2
Query: 723 GGXXXXXXXXXPPPPPP 673
GG PPPPPP
Sbjct: 182 GGKRPIQGSSVPPPPPP 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,117
Number of Sequences: 37544
Number of extensions: 508519
Number of successful extensions: 4576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3351355252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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