Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_B11
(1114 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 33 0.48
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 33 0.48
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 30 2.6
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 4.5
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 5.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 5.9
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 32.7 bits (71), Expect = 0.48
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 735 GXGGGGXXXXXXXXXPPPPPPXXXGGG 655
G GGG PPPPPP GGG
Sbjct: 50 GGGGGSYAAAPALPPPPPPPPAPIGGG 76
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 32.7 bits (71), Expect = 0.48
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 735 GXGGGGXXXXXXXXXPPPPPPXXXGGG 655
G GGG PPPPPP GGG
Sbjct: 50 GGGGGSYAAAPALPPPPPPPPAPIGGG 76
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 736 GXGXGGGXXXXXXXXPPPPPXXXXGG 659
G G GGG PPPPP GG
Sbjct: 39 GGGCGGGGGCGGGCAPPPPPPACGGG 64
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 736 GXGXGGGXXXXXXXXPPPPPXXXXGG 659
G G GGG PPPPP GG
Sbjct: 96 GGGCGGGGGCGGGCAPPPPPPACGGG 121
Score = 29.1 bits (62), Expect = 5.9
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 674 GGGGGGXXXXXXXXXPPPPXPXXXXXXXXXXXXXXXXXXXXGGGGG 811
GGG GG PPPP P GGGGG
Sbjct: 39 GGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGG 84
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 740 GGGXXGGGXXXXXXXXXPPPPXXXXGG 660
GGG GGG PPPP GG
Sbjct: 38 GGGGCGGGGGCGGGCAPPPPPPACGGG 64
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 740 GGGXXGGGXXXXXXXXXPPPPXXXXGG 660
GGG GGG PPPP GG
Sbjct: 95 GGGGCGGGGGCGGGCAPPPPPPACGGG 121
Score = 26.6 bits (56), Expect(2) = 2.4
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 674 GGGGGGXXXXXXXXXPPPPXPXXXXXXXXXXXXXXXXXXXXGGGG 808
GGG GG PPPP P GGGG
Sbjct: 96 GGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGG 140
Score = 25.8 bits (54), Expect(2) = 4.1
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 674 GGGGGGXXXXXXXXXPPPPXPXXXXXXXXXXXXXXXXXXXXGGGGG 811
GGGG G PPP P GGGGG
Sbjct: 95 GGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGG 140
Score = 22.2 bits (45), Expect(2) = 4.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 656 PPPXXXGGGGGG 691
PPP GGG GG
Sbjct: 56 PPPPACGGGCGG 67
Score = 22.2 bits (45), Expect(2) = 2.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 656 PPPXXXGGGGGG 691
PPP GG GGG
Sbjct: 57 PPPACGGGCGGG 68
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 735 GXGGGGXXXXXXXXXPPPPPPXXXGG 658
G GG G PPPPPP GG
Sbjct: 197 GGGGSGGSGGGSGRFPPPPPPYGGGG 222
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 658 PPPXXXXGGGGXXXXXXXXXPPPXXPPP 741
PPP GGGG P P PPP
Sbjct: 797 PPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 658 PPPXXXXGGGGXXXXXXXXXPPPXXPPP 741
PPP GGGG P P PPP
Sbjct: 797 PPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 735 GXGGGGXXXXXXXXXPPPPPP 673
G GGGG PPPPPP
Sbjct: 82 GGGGGGGYGRPQGYVPPPPPP 102
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 735 GXGGGGXXXXXXXXXPPPPPP 673
G GGGG PPPPPP
Sbjct: 83 GGGGGGYGRPQGYVPPPPPPP 103
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 674 GGGGGGXXXXXXXXXPPPPXP 736
GGGGGG PPPP P
Sbjct: 82 GGGGGGGYGRPQGYVPPPPPP 102
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 674 GGGGGGXXXXXXXXXPPPPXP 736
GGGGGG PPPP P
Sbjct: 83 GGGGGGYGRPQGYVPPPPPPP 103
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +2
Query: 656 PPPXXXGG--GGGGXXXXXXXXXPPPPXPXXXXXXXXXXXXXXXXXXXXGGGG 808
PPP GG GGGG PPP P GGGG
Sbjct: 50 PPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +2
Query: 656 PPPXXXGG--GGGGXXXXXXXXXPPPPXPXXXXXXXXXXXXXXXXXXXXGGGG 808
PPP GG GGGG PPP P GGGG
Sbjct: 50 PPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 407 GGGGAPPXQKRGGGWVKFFXGXPXKXGXPQ 318
GG G P Q+ GGGW + G G PQ
Sbjct: 269 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 298
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 407 GGGGAPPXQKRGGGWVKFFXGXPXKXGXPQ 318
GG G P Q+ GGGW + G G PQ
Sbjct: 232 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 261
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 407 GGGGAPPXQKRGGGWVKFFXGXPXKXGXPQ 318
GG G P Q+ GGGW + G G PQ
Sbjct: 231 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 260
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 407 GGGGAPPXQKRGGGWVKFFXGXPXKXGXPQ 318
GG G P Q+ GGGW + G G PQ
Sbjct: 270 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 299
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 407 GGGGAPPXQKRGGGWVKFFXGXPXKXGXPQ 318
GG G P Q+ GGGW + G G PQ
Sbjct: 269 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,122
Number of Sequences: 27780
Number of extensions: 226997
Number of successful extensions: 1593
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 2994689446
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -