Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_B10
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.024
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.70
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.70
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.70
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.1 bits (77), Expect = 0.014
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 729 PPPXXGXXXXPPPPPPPPPXXXXXKKKKKK 818
PPP PP PPPPP KK+K K
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 728 PPPXXGXXXXPPPPPPPPPXXXXXXKKKKKK 820
PPP PP PPPP KK+K K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.024
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 729 PPPXXGXXXXPPPPPPPPP 785
PPP G PPPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 34.3 bits (75), Expect = 0.024
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 728 PPPXXGXXXXPPPPPPPPP 784
PPP PPPPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.92
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 732 PPXXGXXXXPPPPPPPP 782
PP PPPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 728 PPPXXGXXXXPPPPPPPPP 784
P P PPPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 728 PPPXXGXXXXPPPPPPPPP 784
PPP PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.70
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 758 PPPPPPPPP 784
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.70
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 758 PPPPPPPPP 784
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 759 PPPPPPPPP 785
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.70
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 758 PPPPPPPPP 784
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 762 PPPPPPPPXXXXXKKKKK 815
PPPPPPPP K +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 759 PPPPPPPP 782
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 728 PPPXXGXXXXPPPPPPPPP 784
PP G PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 758 PPPPPPPP 781
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 762 PPPPPPPP 785
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 765 PPPPPPPXXXXXKK 806
PPPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,939
Number of Sequences: 5004
Number of extensions: 19233
Number of successful extensions: 337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -