Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B06
         (1208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.016
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    30   0.74 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   6.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect(2) = 0.016
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 800 PPPPPPPXXXKKK 762
           PPPPPPP   KK+
Sbjct: 24  PPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect(2) = 0.016
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 803 PPPPPPPPXXXKKK 762
           PPPPPPP    K+K
Sbjct: 24  PPPPPPPGYVKKRK 37


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 803  PPPPPPPPXXXKKK 762
            PPPPPPPP   +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 803  PPPPPPPPXXXKKKXFXXFF 744
            PPPPPPP    KK  +   +
Sbjct: 1096 PPPPPPPAEVEKKDLYLALY 1115


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 803 PPPPPPPP 780
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 969,156
Number of Sequences: 5004
Number of extensions: 10693
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)