Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B04
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.76 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 23/105 (21%), Positives = 25/105 (23%)
 Frame = +2

Query: 473  PXXXPXXXXPXXGVSXRXXPXXPPXXXXXXPXXXPPSXXXPPXXPRXXXXXXPXXXPXGX 652
            P   P    P   V     P   P      P     +   PP  P           P G 
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082

Query: 653  PXXDXPVPXXXXPXXXPRXXPPPXXRXXXPXXRXGXXPXPPPXPK 787
            P    P P    P   P    PP  +              PP PK
Sbjct: 1083 P--PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK 1125



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 28/108 (25%), Positives = 28/108 (25%), Gaps = 3/108 (2%)
 Frame = +2

Query: 473  PXXXPXXXXPXXGVSXRXXPXXPPXXXXXXPXXXPPSXXXPPXXPRXXXXXXPXXXPX-G 649
            P   P    P    S    P   P      P    PS   PP  P       P   P  G
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK---PSVAAPPV-PAPSSGIPPVPKPAAG 1187

Query: 650  XPXXDXP--VPXXXXPXXXPRXXPPPXXRXXXPXXRXGXXPXPPPXPK 787
             P    P   P    P       PPP      P    G  P P P  K
Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 324 LRSLISNLSNTCDLTPLPEWSCEQSAW 244
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/87 (20%), Positives = 19/87 (21%)
 Frame = +3

Query: 417 PXPXXXXXPXXPXXXXXXSRXXXXXXXXXSPGXRPGXXPXXPXXRXXXPPXAXPPPXXXP 596
           P P     P  P                 +P   P   P  P      PP   PPP    
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQA 209

Query: 597 XXXXAXXXPRXLXXPLXXXPPXXXXSP 677
                   P     P    P     SP
Sbjct: 210 PVANTSSRPSSFAPPAGHAPNVTSESP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,293
Number of Sequences: 5004
Number of extensions: 12213
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)