Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B01
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   3.0  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   3.0  
12_01_0838 - 7830944-7831444                                           29   4.0  
01_01_0929 - 7344911-7345978                                           24   4.9  
10_08_0213 - 15912048-15912716                                         28   7.0  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +1

Query: 493 PRGXPPP--PXRXXXXXPSPXXXPXXGVXGXXGXXPXXXXLXGPPRG-GP 633
           P   PPP  P       P P   P  G  G  G  P    L G PR  GP
Sbjct: 349 PPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGP 398


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = +1

Query: 472 PXVXXXXPRGXPPPPXRXXXXXPSPXXXPXXGVXGXXGXXPXXXXLXGPPRGGP 633
           P V    P+  PPPP       P     P  G  G     P      GPPR  P
Sbjct: 270 PQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVG--GTQPPPPPPPLANGPPRSIP 321


>12_01_0838 - 7830944-7831444
          Length = 166

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -1

Query: 652 GXGXQXXGPPGGXXGAXEXXGXGPXXXQPRXXXKXRXTXXXXXXGGGGGGXRXGE 488
           G G    G  GG  G+    G G    Q     + + +      GGGGGG   G+
Sbjct: 73  GSGGGGGGGGGGSNGSGSGSGYGYGYGQGNGGAQGQGSGGGGGGGGGGGGGGSGQ 127


>01_01_0929 - 7344911-7345978
          Length = 355

 Score = 23.8 bits (49), Expect(2) = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 498 RXPPPPPPXXXXLXV 542
           R PPPPPP    L V
Sbjct: 32  RPPPPPPPFCPHLSV 46



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 489 SPXRXPPPPPP 521
           S  R PPPPPP
Sbjct: 28  SKTRRPPPPPP 38


>10_08_0213 - 15912048-15912716
          Length = 222

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/90 (24%), Positives = 24/90 (26%)
 Frame = -1

Query: 652 GXGXQXXGPPGGXXGAXEXXGXGPXXXQPRXXXKXRXTXXXXXXGGGGGGXRXGEXXXPX 473
           G G    G  GG  GA    G G              +      GGGGGG + G      
Sbjct: 109 GAGGYGSGGGGGGGGAGSGYGSGEGYGSGYGSGAGGASGGGGGHGGGGGGGQGGGYGSGS 168

Query: 472 XNXQXXTXXXXGGPXGPPXXKXXAXGXGXG 383
                      GG  G         G G G
Sbjct: 169 GYGSGRGYGQGGGAYGGGYASGGGGGGGGG 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,758
Number of Sequences: 37544
Number of extensions: 329907
Number of successful extensions: 3460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)