Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B01
         (760 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    33   1.5  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               33   1.5  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        33   1.5  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        33   1.5  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    33   1.5  
AB002337-1|BAA20797.2| 1709|Homo sapiens KIAA0339 protein protein.     31   3.4  

>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/83 (27%), Positives = 24/83 (28%)
 Frame = +1

Query: 385 PXPXXLPXLSXXXXPXGPXRXXXXXXEXXPXVXXXXPRGXPPPPXRXXXXXPSPXXXPXX 564
           P P   P       P GP           P V    P   PPPP +     P P      
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPP-----PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328

Query: 565 GVXGXXGXXPXXXXLXGPPRGGP 633
           G  G          L GPP G P
Sbjct: 329 GPLGPPLTLAPPPHLPGPPPGAP 351


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/83 (27%), Positives = 24/83 (28%)
 Frame = +1

Query: 385 PXPXXLPXLSXXXXPXGPXRXXXXXXEXXPXVXXXXPRGXPPPPXRXXXXXPSPXXXPXX 564
           P P   P       P GP           P V    P   PPPP +     P P      
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPP-----PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328

Query: 565 GVXGXXGXXPXXXXLXGPPRGGP 633
           G  G          L GPP G P
Sbjct: 329 GPLGPPLTLAPPPHLPGPPPGAP 351


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/83 (27%), Positives = 24/83 (28%)
 Frame = +1

Query: 385 PXPXXLPXLSXXXXPXGPXRXXXXXXEXXPXVXXXXPRGXPPPPXRXXXXXPSPXXXPXX 564
           P P   P       P GP           P V    P   PPPP +     P P      
Sbjct: 201 PPPVLFPGQPFGQPPLGPLPPGPP-----PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 255

Query: 565 GVXGXXGXXPXXXXLXGPPRGGP 633
           G  G          L GPP G P
Sbjct: 256 GPLGPPLTLAPPPHLPGPPPGAP 278


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/83 (27%), Positives = 24/83 (28%)
 Frame = +1

Query: 385 PXPXXLPXLSXXXXPXGPXRXXXXXXEXXPXVXXXXPRGXPPPPXRXXXXXPSPXXXPXX 564
           P P   P       P GP           P V    P   PPPP +     P P      
Sbjct: 311 PPPVLFPGQPFGQPPLGPLPPGPP-----PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 365

Query: 565 GVXGXXGXXPXXXXLXGPPRGGP 633
           G  G          L GPP G P
Sbjct: 366 GPLGPPLTLAPPPHLPGPPPGAP 388


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/83 (27%), Positives = 24/83 (28%)
 Frame = +1

Query: 385 PXPXXLPXLSXXXXPXGPXRXXXXXXEXXPXVXXXXPRGXPPPPXRXXXXXPSPXXXPXX 564
           P P   P       P GP           P V    P   PPPP +     P P      
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPP-----PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328

Query: 565 GVXGXXGXXPXXXXLXGPPRGGP 633
           G  G          L GPP G P
Sbjct: 329 GPLGPPLTLAPPPHLPGPPPGAP 351


>AB002337-1|BAA20797.2| 1709|Homo sapiens KIAA0339 protein protein.
          Length = 1709

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 492 PXRXPPPPPPXXXXLXVXLXFXXXRGXWXXGPXPXXSXAPXXPPGGP 632
           P   PPPPPP      + L +   +  +   P P     P  PP  P
Sbjct: 607 PPPPPPPPPPPPYLASLPLGYPPHQPAYLLPPRPDGPPPPEYPPPPP 653


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,521,362
Number of Sequences: 237096
Number of extensions: 1708599
Number of successful extensions: 8876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7013
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)