Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_A16
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    63   3e-11
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   1.2  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.1  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   8.5  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = -1

Query: 615 FRGSIYRKVXDKLXCGVSMXWTAGSXDTLFGV--GAKYALDQDAXLHAKINNKSXIGLGY 442
           FR S Y +V   +  G ++ W A S      +   +KYALD+D  +  KIN+     L Y
Sbjct: 187 FRASYYHRVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSY 246

Query: 441 QQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 346
            Q +RPGVT+ L   +D Q      HK G++L
Sbjct: 247 FQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 448 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 272
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 665 PIWGXWFPNPNVDN 624
           P+W  WF NP+VD+
Sbjct: 506 PLWSEWFYNPDVDD 519


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 585 DKLXCGVSMXWTAGSXDTLFGVG 517
           D + CGV   W   + D L+G+G
Sbjct: 349 DGVTCGVQWWWNNDTWDGLYGLG 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,141
Number of Sequences: 5004
Number of extensions: 56717
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)