Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_A12
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 706 PPSPAISGTSTRSSNPRFHTPTTPDLTSISINPL 605
           PPS   SG   R   PR+++ +  D  S  + PL
Sbjct: 400 PPSRKESGRRRRRRTPRYNSVSKIDRASRIVFPL 433


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -3

Query: 731 LRFRXXHQATXPCDFGYINPIIKSPIPYTNHPRLNIHFHQSP 606
           LR +     T P ++   NP +    P   +P  + H  Q P
Sbjct: 412 LRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQP 453


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 529 PSSLGMAKGVSPPYFQVNDESQASRLIS 446
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 529 PSSLGMAKGVSPPYFQVNDESQASRLIS 446
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 683 YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 582
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 683 YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 582
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 683 YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 582
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,822
Number of Sequences: 438
Number of extensions: 4807
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)