Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_A05
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 247 2e-66
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 149 4e-37
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 144 2e-35
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 124 2e-29
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 119 5e-28
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 101 1e-22
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.74
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 29 0.97
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.1
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 9.1
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 247 bits (604), Expect = 2e-66
Identities = 111/188 (59%), Positives = 145/188 (77%), Gaps = 1/188 (0%)
Frame = -2
Query: 684 NEIXSITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWC 505
NE+ S+TA+LSVP FVRPN ARK ADE + +F H DGDHLTLLNVYHA+K WC
Sbjct: 522 NEVLSLTALLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWC 581
Query: 504 YDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHL 325
+++F+++R+L S DNVR+QL R M+R ++ ST F K+YY+NIR+ALV+GFFMQVA
Sbjct: 582 WNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKK 641
Query: 324 ERTG-SYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAP 148
G +Y+T+KDNQVV LHPS L P+WV+YNEFVLTTK++IR VT I+PEWL+++AP
Sbjct: 642 SANGKNYVTMKDNQVVSLHPSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAP 701
Query: 147 QYYELGNF 124
YY+L +F
Sbjct: 702 NYYDLDDF 709
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1
Query: 766 LGALMAEFPLDPQXAQMLIASCNHNCS 686
LG +EFPLDP A MLI S CS
Sbjct: 495 LGRKASEFPLDPNLAVMLIRSPEFYCS 521
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 149 bits (361), Expect = 4e-37
Identities = 75/190 (39%), Positives = 117/190 (61%), Gaps = 2/190 (1%)
Frame = -2
Query: 681 EIXSITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCY 502
E+ SI AMLSVP + RP E ++ AD + +FA+ + DHLTLLNVY +K N +WCY
Sbjct: 950 EMLSIIAMLSVPNIWSRPREKQQEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCY 1009
Query: 501 DNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE 322
+++I R ++ ++VR+QL R+MDR+ S + I +AL +G+F VA +
Sbjct: 1010 EHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRE----LILRALCSGYFTNVAKRD 1065
Query: 321 -RTGSYLTVKDNQVVQLHPSTCLDHK-PDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAP 148
G Y T+ +N V +HPS L K +WVIY+E + T+K Y+ TV+ + P+WL+++AP
Sbjct: 1066 SHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAP 1125
Query: 147 QYYELGNFPQ 118
+++ N Q
Sbjct: 1126 TFFKFANANQ 1135
Score = 33.1 bits (72), Expect = 0.045
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 766 LGALMAEFPLDPQXAQMLIASCNHNCSQ 683
LG MA+FP++PQ +++LI S CS+
Sbjct: 922 LGRKMADFPMEPQLSKVLITSVELGCSE 949
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 144 bits (348), Expect = 2e-35
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
Frame = -2
Query: 681 EIXSITAMLS-VPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWC 505
E+ SI +ML F RP + AD+A+ F GDHLTLL++++ + +W
Sbjct: 858 EVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWA 917
Query: 504 YDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHL 325
+NF+ Y+SL +VR QL+ + +R ++ + S D I+KA+ G+F A L
Sbjct: 918 RENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLD---PIKKAITAGYFSNAARL 974
Query: 324 ERTG-SYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIA 151
+R+G SY TVK NQ V +HPS+ + + KP +IY E VLTTK Y R +T+I+PEWLL+I+
Sbjct: 975 DRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEIS 1034
Query: 150 PQYYELGNFPQ 118
P Y++ N +
Sbjct: 1035 PHYFKPENIEE 1045
Score = 33.1 bits (72), Expect = 0.045
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 766 LGALMAEFPLDPQXAQMLIASCNHNC 689
LG MAEFP DP ++ LIAS + C
Sbjct: 830 LGRQMAEFPTDPMLSKSLIASSKYGC 855
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 124 bits (298), Expect = 2e-29
Identities = 67/186 (36%), Positives = 107/186 (57%), Gaps = 3/186 (1%)
Frame = -2
Query: 681 EIXSITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCY 502
EI +I +MLSVP F RP E + +D A+ +F + DHL LLN+Y +++N WC
Sbjct: 930 EIITIVSMLSVPSVFYRPKERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCS 989
Query: 501 DNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE 322
+F++ ++LK ++RQQL IM + ++ S E S D+ I +R+ L + +F Q A +
Sbjct: 990 KHFLHSKTLKRARDIRQQLVEIMSK---QKISLESVS-DWDI-VRRVLCSAYFHQAACAK 1044
Query: 321 RTGSYLTVKDNQVVQLHPSTC---LDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIA 151
G Y+ ++ LH ++ L + PD+VIY+E VLT+K Y+ VT + P WL +
Sbjct: 1045 GIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFG 1104
Query: 150 PQYYEL 133
YY +
Sbjct: 1105 GVYYSV 1110
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 766 LGALMAEFPLDPQXAQMLIASCNHNCSQ 683
LG M+ FP+DP ++++I + ++ C++
Sbjct: 902 LGKKMSLFPMDPSLSKLIIIAEDYKCTE 929
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 119 bits (286), Expect = 5e-28
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Frame = -2
Query: 684 NEIXSITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMED--PH 511
+E+ + + LS F+ P E R A EA+++F H +GD LT LN + ++ D
Sbjct: 533 SEVIDVVSCLSTDSMFLFPQEKRDEAIEARLKFLHSEGDLLTCLNALRQYLESSHDSRKQ 592
Query: 510 WCYDNFINYRSLKSGDNVRQQLSR--IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQ 337
WC NFIN R+LK+ ++R+QL + D + L +S E S+ N+ + ++G+
Sbjct: 593 WCSQNFINRRALKTILDIRKQLREHCLKDGWEL-NSSPEVNSE----NLLLSFLSGYITN 647
Query: 336 VAHLERTGSYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLL 160
A L GSY T+ NQ + +HPS+ L K + ++Y+E V TTK+Y+R V+ I+ WL
Sbjct: 648 TALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLN 707
Query: 159 KIAPQY 142
+AP Y
Sbjct: 708 AVAPHY 713
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 769 DLGALMAEFPLDPQXAQMLIASCNHNC 689
DLG M+ PL P A+ ++A+ HNC
Sbjct: 505 DLGYQMSLIPLLPSLARAVLAAREHNC 531
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 101 bits (242), Expect = 1e-22
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Frame = -2
Query: 684 NEIXSITAMLSVPQCFVRPNEARKA-ADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHW 508
+EI SI ++L+ + F P + K A A F +GD +T LNV+ +F N +D W
Sbjct: 466 HEILSIASILTAGEVFYNPTSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQW 525
Query: 507 CYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAH 328
C N++NY++L+ ++R L R +++F++ T+ S D I K L++GF VAH
Sbjct: 526 CRKNYLNYQTLRQALDIRTHLVRFLNKFSIP-TAQRLPSSD-CSKILKCLLDGFVRNVAH 583
Query: 327 LERTGSYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVLT-TKNYIRTVTDIKPEWLLK 157
L+ GSY T+ QV S + K W++Y+ V + T+ +++ ++ I+ WL K
Sbjct: 584 LQNDGSYKTIGGKQVWLDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDK 641
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 766 LGALMAEFPLDPQXAQMLIASCNHNC 689
LG M+ FPL P+ ++MLI H C
Sbjct: 871 LGEQMSLFPLSPRFSKMLIIGQQHGC 896
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 502 IAPVGILHVLFEGVVYVQQREMVTVDVGKTHFSLVGS 612
I P GI H+L EG+ Y Q E+ +D+ F+ +GS
Sbjct: 199 IRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFTHLGS 233
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 396 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 274
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 543 HAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFN 421
HA ++ E +F YRSL G V++ SR+ R N
Sbjct: 2057 HALQEERERVKSLETDFDKYRSLLEGQRVKRSESRLSMRSN 2097
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 578 STVTISRC*TYTTPSNRTWRIPTGAMITSSITDR*SQATTSGSNLAGLW 432
STV S + P + + P SS T S +TTSGS+ + W
Sbjct: 218 STVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGSSDW 266
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 471 SGDNVRQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 304
S ++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 29 SSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,441
Number of Sequences: 5004
Number of extensions: 58046
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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