Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_A02
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.58
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 0.77
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 1.3
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 3.1
12_02_1174 - 26696869-26698191 28 7.2
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732... 28 7.2
07_03_0558 + 19461369-19462448 28 7.2
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 28 9.5
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 9.5
07_01_0479 + 3606663-3607448 28 9.5
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 9.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 9.5
03_02_0765 + 11000724-11002496 28 9.5
01_01_0070 - 542603-542686,542803-543441 28 9.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 454 PXXTXGPPGXXDXXXXPPLLXRPPXXPPRXPSXXXGPPP 570
P PP PP PP PP+ PS PPP
Sbjct: 332 PKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = -2
Query: 656 GXXAXGGXXXXXXXGXPPXXRXXXGXDYXGGGPXXXXGXRGGXXGGRXXSGGXXXXSXXP 477
G GG G G Y GGG G RGG GG GG
Sbjct: 51 GRGGGGGGGGGYGGGGVGGGYGGGGGGYGGGGGGYGGGGRGGGGGGGYGGGGGGGRGGGG 110
Query: 476 GG 471
GG
Sbjct: 111 GG 112
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/68 (27%), Positives = 22/68 (32%)
Frame = +1
Query: 454 PXXTXGPPGXXDXXXXPPLLXRPPXXPPRXPSXXXGPPPX*SXPXLXRXXGGXPXXXXXX 633
P + GPP PP PP PP P G PP P + P
Sbjct: 258 PNGSGGPPRPPPPQVPPPPPQAPPPPPPNAP---MGMPPRIPPPPVGGTQPPPPPPPLAN 314
Query: 634 SPPXAXXP 657
PP + P
Sbjct: 315 GPPRSIPP 322
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 596 RXXXGXDYXGGGPXXXXGXRGGXXGGRXXSGGXXXXSXXPGG 471
R G D GGG G G GGR GG PGG
Sbjct: 20 RGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGG 61
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 584 GXDYXGGGPXXXXGXRGGXXGGRXXSGG 501
G Y GGG G GG GG SGG
Sbjct: 62 GRGYGGGGGGGGRGYGGGGGGGGYESGG 89
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +2
Query: 536 PXSXPXXXDPXPGSPXLXXPVXRXXXXXXXXSXPPXLXP-SPXXPXXXXSPVXXPP 700
P S P P P P P + PP L P SP P P PP
Sbjct: 149 PPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPP 204
>12_02_0450 +
19172812-19172920,19173020-19173088,19173168-19173274,
19173874-19174365
Length = 258
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -2
Query: 584 GXDYXGGGPXXXXGXRGGXXGGRXXSGGXXXXSXXPGG 471
G Y GGG G GG GG GG GG
Sbjct: 135 GGGYSGGGGYGGGGYSGGGGGGGGYQGGGGGYGGNNGG 172
>07_03_0558 + 19461369-19462448
Length = 359
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = -2
Query: 656 GXXAXGGXXXXXXXGXPPXXRXXXGXDYXGGGPXXXXGXRGGXXGGRXXSGGXXXXSXXP 477
G GG G G + GGG G +GG GG +GG
Sbjct: 74 GGGHGGGFGGGGGLGGGASGGVGGGGGFGGGGGGGLGGGQGGGFGGGAGAGGGAGGGLGG 133
Query: 476 GG 471
GG
Sbjct: 134 GG 135
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +1
Query: 502 PPLLXRPPXXPPRXPSXXXGPPPX*SXPXLXRXXGGXPXXXXXXSPPXA 648
PP L PP PP P P S P L P PP A
Sbjct: 20 PPELRLPPPPPPHPPPPPPLEPAPPSTPQLRGEASPPPPPPPPVGPPGA 68
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +1
Query: 454 PXXTXGPPGXXDXXXXPPLLXRPPXXPPRXPSXXXGPP 567
P T PP P ++ PP P PS PP
Sbjct: 625 PEVTPSPPEITPYPSPPDIVPSPPSYEPSPPSYEPSPP 662
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = +1
Query: 454 PXXTXGPPGXXDXXXXPPLLX----RPPXXPPRXPSXXXGPPP 570
P PPG PP + RPP PP P GPPP
Sbjct: 164 PQVVRPPPGQMPPPMRPPQMPIPFQRPPGVPPAFPG---GPPP 203
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +1
Query: 502 PPLLXRPPXXP-PRXPSXXXGPPPX*SXPXLXRXXGGXPXXXXXXSPPXAXXPS 660
PP PP P P P PPP P + P +PP A P+
Sbjct: 153 PPAPPSPPQDPAPSLPHAPAPPPPQAPAPTPPQAPAPTPPRAPTPTPPQAPLPA 206
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/88 (26%), Positives = 26/88 (29%)
Frame = +1
Query: 502 PPLLXRPPXXPPRXPSXXXGPPPX*SXPXLXRXXGGXPXXXXXXSPPXAXXPSTXXXXXF 681
PPL PP PP P PP P P +PP A P+
Sbjct: 71 PPLAASPPPPPPPPPPRNSPSPP---KPPSQAAQSPLPPTTTTTTPPTAPVPAAA----- 122
Query: 682 PRGAAXXXAYXRXAXXRSVXSXPXPSPP 765
P A + P PSPP
Sbjct: 123 PPPTAPSPYSAPSPTPTPTHTQPRPSPP 150
>03_02_0765 + 11000724-11002496
Length = 590
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/105 (23%), Positives = 28/105 (26%)
Frame = -2
Query: 767 GGGEGSGXXXTERXXAXRXXAXXXAAPRGNXLXKXVEGXXAXGGXXXXXXXGXPPXXRXX 588
GGG G+G A A G L G G G
Sbjct: 313 GGGAGAGGGLGGGAGAGGGGGLGGGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGAGGGG 372
Query: 587 XGXDYXGGGPXXXXGXRGGXXGGRXXSGGXXXXSXXPGGPSVXXG 453
GGG G GG GG GG + GG + G
Sbjct: 373 GLGGGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGTGGGGGLGGG 417
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/105 (23%), Positives = 28/105 (26%)
Frame = -2
Query: 767 GGGEGSGXXXTERXXAXRXXAXXXAAPRGNXLXKXVEGXXAXGGXXXXXXXGXPPXXRXX 588
GGG G+G A A G L G G G
Sbjct: 353 GGGAGAGGGLGGGAGAGGGGGLGGGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGTGGGG 412
Query: 587 XGXDYXGGGPXXXXGXRGGXXGGRXXSGGXXXXSXXPGGPSVXXG 453
GGG G GG GG GG + GG + G
Sbjct: 413 GLGGGAGGGGGLGGGAGGGLGGGAGAGGGFGGGAGAGGGGGLGGG 457
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +1
Query: 472 PPGXXDXXXXPPLLXRPPXXPPRXPSXXXGPPPX*SXPXLXRXXGGXPXXXXXXSPPXAX 651
PP PP + PP PP PPP P L P P A
Sbjct: 82 PPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPAL--PPSTPPPVAAPAEAPAAL 139
Query: 652 XPST 663
P+T
Sbjct: 140 PPAT 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,416
Number of Sequences: 37544
Number of extensions: 215036
Number of successful extensions: 1705
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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