Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_A01
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    69   9e-13
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    63   5e-11
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   8.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 68.5 bits (160), Expect = 9e-13
 Identities = 30/51 (58%), Positives = 36/51 (70%)
 Frame = -1

Query: 508 VDIXIPCNTKXSQXIGXMWWLLAREVLRIRGVLXRDQRWDVVXDLFXYRXP 356
           VDI IP N K  + IG +W+LLAREVLR+RG L R   WDV+ DL+ YR P
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 27/51 (52%), Positives = 35/51 (68%)
 Frame = -1

Query: 508 VDIXIPCNTKXSQXIGXMWWLLAREVLRIRGVLXRDQRWDVVXDLFXYRXP 356
           VD+ IP N K  + IG  W+LLAREVLR+RG + R   W+V+ DL+ YR P
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 472 QXIGXMWWLLAREVLRIRGVLXRDQRWD 389
           Q IG  W L  REV R + +  R++ WD
Sbjct: 363 QEIGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,665
Number of Sequences: 5004
Number of extensions: 26763
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)