Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_P24
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 176 2e-44
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 174 6e-44
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.36
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 30 2.6
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 29 3.4
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 29 3.4
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 28 7.8
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 176 bits (428), Expect = 2e-44
Identities = 80/130 (61%), Positives = 95/130 (73%)
Frame = +3
Query: 72 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
++PGSK++KKE AVTIIETPP+V V +V Y+ P GL L +VW E+ F K
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 432 NXXXXKXKLF 461
N K K F
Sbjct: 121 NWCKSKKKAF 130
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 174 bits (424), Expect = 6e-44
Identities = 79/130 (60%), Positives = 95/130 (73%)
Frame = +3
Query: 72 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
++PGSK++KKE AVTIIETPP+V V +V Y+ P GL L +VW E+ F K
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 432 NXXXXKXKLF 461
N K K F
Sbjct: 121 NWCKSKKKAF 130
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +2
Query: 614 PP*KXGGXSXGPPXFXKKNXPKX--KXPPPXXVXKNXXPPPPXXGXXXP 754
PP K + PP K P K PPP K PPPP G P
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 644 GPPXFXKKNXPKXKXPPPXXVXKNXXPPPPXXG 742
GPP P PPP K PPPP G
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 614 PP*KXGGXSXGPPXFXKKNXPKXKXPPPXXVXKNXXPPPP 733
PP PP P K PPP K PPPP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 63 SSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 203
S+S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 646 PPXLFXKKXSKKXXPPPXFXXXKLXPPP 729
PP F +K + PPP KL PPP
Sbjct: 134 PPVAFRRKPPAREAPPPPPAAEKLSPPP 161
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 33 CXTGILVCDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDD 179
C + CD+ +S +H+ PR G + F K RR G ++D
Sbjct: 360 CRSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADEND 408
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 33 CXTGILVCDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDD 179
C CD+ +S +H+ PR G + F K R+ G + ++D
Sbjct: 330 CRNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVEND 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,780,797
Number of Sequences: 37544
Number of extensions: 425876
Number of successful extensions: 1123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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