Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_P24
(821 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 204 2e-52
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 203 2e-52
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 203 2e-52
AE014297-1263|AAF54612.2| 161|Drosophila melanogaster CG4863-PD... 200 2e-51
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 175 8e-44
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 175 8e-44
AE014297-1266|AAF54611.1| 125|Drosophila melanogaster CG4863-PC... 171 1e-42
AE013599-399|AAM68891.2| 409|Drosophila melanogaster CG11112-PB... 30 3.3
X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP pro... 29 7.7
X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous ... 29 7.7
X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein. 29 7.7
BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p pro... 29 7.7
AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-P... 29 7.7
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 204 bits (497), Expect = 2e-52
Identities = 93/132 (70%), Positives = 101/132 (76%)
Frame = +3
Query: 66 SSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 245
+ MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VR
Sbjct: 10 TDMSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVR 69
Query: 246 EPDRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXF 425
E DRPGSKINKKE+V AVT++ETPPM+ V VGYI P GL L+ VW E+C F
Sbjct: 70 EADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRF 129
Query: 426 XKNXXXXKXKLF 461
KN K K F
Sbjct: 130 YKNWYKSKKKAF 141
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 203 bits (496), Expect = 2e-52
Identities = 93/130 (71%), Positives = 100/130 (76%)
Frame = +3
Query: 72 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
DRPGSKINKKE+V AVT++ETPPM+ V VGYI P GL L+ VW E+C F K
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 432 NXXXXKXKLF 461
N K K F
Sbjct: 121 NWYKSKKKAF 130
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 203 bits (496), Expect = 2e-52
Identities = 93/130 (71%), Positives = 100/130 (76%)
Frame = +3
Query: 72 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
DRPGSKINKKE+V AVT++ETPPM+ V VGYI P GL L+ VW E+C F K
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 432 NXXXXKXKLF 461
N K K F
Sbjct: 121 NWYKSKKKAF 130
>AE014297-1263|AAF54612.2| 161|Drosophila melanogaster CG4863-PD,
isoform D protein.
Length = 161
Score = 200 bits (488), Expect = 2e-51
Identities = 91/133 (68%), Positives = 101/133 (75%)
Frame = +3
Query: 72 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
DRPGSKINKKE+V AVT++ETPPM+ V VGYI P GL L+ VW E+C F K
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 432 NXXXXKXKLFKMP 470
N + + +P
Sbjct: 121 NWYVSEDHVVVLP 133
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 175 bits (425), Expect = 8e-44
Identities = 80/117 (68%), Positives = 87/117 (74%)
Frame = +3
Query: 111 MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 290
M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 291 XAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXKNXXXXKXKLF 461
AVT++ETPPM+ V VGYI P GL L+ VW E+C F KN K K F
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 117
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 175 bits (425), Expect = 8e-44
Identities = 80/117 (68%), Positives = 87/117 (74%)
Frame = +3
Query: 111 MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 290
M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 291 XAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXKNXXXXKXKLF 461
AVT++ETPPM+ V VGYI P GL L+ VW E+C F KN K K F
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 117
>AE014297-1266|AAF54611.1| 125|Drosophila melanogaster CG4863-PC,
isoform C protein.
Length = 125
Score = 171 bits (415), Expect = 1e-42
Identities = 77/108 (71%), Positives = 84/108 (77%)
Frame = +3
Query: 111 MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 290
M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 291 XAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXKN 434
AVT++ETPPM+ V VGYI P GL L+ VW E+C F KN
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 108
>AE013599-399|AAM68891.2| 409|Drosophila melanogaster CG11112-PB,
isoform B protein.
Length = 409
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 647 PPXFXKKNXPKXKXPPPXXVXKNXXPPPPXXGXXXPXK 760
PP F K + P + PPP PPPP P K
Sbjct: 215 PPPFYKPSRPNRRPPPPPP-PPPPPPPPPTLSPSLPLK 251
>X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP
protein) protein.
Length = 386
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 731 GGGGXSFXXXXXGGGXXFLXNFFXKRXGGQ 642
GGGG F GGG F N + GGQ
Sbjct: 346 GGGGGGFNKGNQGGGQGFAGNNYNTGGGGQ 375
>X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous
nuclear ribonucleoproteinprotein.
Length = 386
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 731 GGGGXSFXXXXXGGGXXFLXNFFXKRXGGQ 642
GGGG F GGG F N + GGQ
Sbjct: 346 GGGGGGFNKGNQGGGQGFAGNNYNTGGGGQ 375
>X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein.
Length = 386
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 731 GGGGXSFXXXXXGGGXXFLXNFFXKRXGGQ 642
GGGG F GGG F N + GGQ
Sbjct: 346 GGGGGGFNKGNQGGGQGFAGNNYNTGGGGQ 375
>BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p
protein.
Length = 385
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 731 GGGGXSFXXXXXGGGXXFLXNFFXKRXGGQ 642
GGGG F GGG F N + GGQ
Sbjct: 345 GGGGGGFNKGNQGGGQGFAGNNYNTGGGGQ 374
>AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-PA,
isoform A protein.
Length = 385
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 731 GGGGXSFXXXXXGGGXXFLXNFFXKRXGGQ 642
GGGG F GGG F N + GGQ
Sbjct: 345 GGGGGGFNKGNQGGGQGFAGNNYNTGGGGQ 374
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,678,977
Number of Sequences: 53049
Number of extensions: 667104
Number of successful extensions: 1823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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