Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_P24
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   185   3e-47
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   185   3e-47
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   185   3e-47
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   185   3e-47
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   185   3e-47
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   185   3e-47
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    64   2e-10
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    64   2e-10
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    35   0.061
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   1.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   1.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   1.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   4.0  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
           D+PGSK+NKKE+V AVTI+ETPPMV   V GY+  P G   L T+W     E+    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 432 NXXXXKXKLF 461
           N    K K F
Sbjct: 121 NWAKSKKKAF 130


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
           D+PGSK+NKKE+V AVTI+ETPPMV   V GY+  P G   L T+W     E+    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 432 NXXXXKXKLF 461
           N    K K F
Sbjct: 121 NWAKSKKKAF 130


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
           D+PGSK+NKKE+V AVTI+ETPPMV   V GY+  P G   L T+W     E+    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 432 NXXXXKXKLF 461
           N    K K F
Sbjct: 121 NWAKSKKKAF 130


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
           D+PGSK+NKKE+V AVTI+ETPPMV   V GY+  P G   L T+W     E+    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 432 NXXXXKXKLF 461
           N    K K F
Sbjct: 121 NWAKSKKKAF 130


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
           D+PGSK+NKKE+V AVTI+ETPPMV   V GY+  P G   L T+W     E+    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 432 NXXXXKXKLF 461
           N    K K F
Sbjct: 121 NWAKSKKKAF 130


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/130 (63%), Positives = 96/130 (73%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 252 DRPGSKINKKEIVXAVTIIETPPMVCVXVVGYIXNPHGLXXLLTVWGGAFFEKCXXXFXK 431
           D+PGSK+NKKE+V AVTI+ETPPMV   V GY+  P G   L T+W     E+    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 432 NXXXXKXKLF 461
           N    K K F
Sbjct: 121 NWAKSKKKAF 130


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 173
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 173
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 614  PP*KXGGXSXGPPXFXKKNXPKXKXPPPXXVXKNXXPPPP 733
            PP + G    GPP       P+   PPP     N  PPPP
Sbjct: 1574 PPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPPP 1613


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 614 PP*KXGGXSXGPPXFXKKNXPKXKXPPPXXVXKNXXPPPPXXGXXXPXKKXGA 772
           PP    G    PP       P+   PPP        PPPP  G   P  + G+
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGS---PPPPPAGGSPPPPRAGS 296


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 614 PP*KXGGXSXGPPXFXKKNXPKXKXPPPXXVXKNXXPPPPXXGXXXPXKKXGA 772
           PP    G    PP       P+   PPP        PPPP  G   P  + G+
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGS---PPPPPAGGSPPPPRAGS 317


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 614 PP*KXGGXSXGPPXFXKKNXPKXKXPPPXXVXKNXXPPPPXXGXXXPXKKXGA 772
           PP    G    PP       P+   PPP        PPPP  G   P  + G+
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGS---PPPPPAGGSPPPPRAGS 302


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
 Frame = +2

Query: 614 PP*KXGGX---SXGPPXFXKK--NXPKXKXPPPXXVXKNXXPPPPXXGXXXP 754
           PP   GG    S GPP         P    PPP    K   PPPP  G   P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
 Frame = +2

Query: 614 PP*KXGGX---SXGPPXFXKK--NXPKXKXPPPXXVXKNXXPPPPXXGXXXP 754
           PP   GG    S GPP         P    PPP    K   PPPP  G   P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
 Frame = +2

Query: 614 PP*KXGGX---SXGPPXFXKK--NXPKXKXPPPXXVXKNXXPPPPXXGXXXP 754
           PP   GG    S GPP         P    PPP    K   PPPP  G   P
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 614 PP*KXGGXSXG--PPXFXKKNXPKXKXPPPXXVXKNXXPPPP 733
           PP    G + G  PP F +   P    PPP     +  PPPP
Sbjct: 744 PPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPP 785


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,425
Number of Sequences: 27780
Number of extensions: 306759
Number of successful extensions: 664
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)