Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_P23
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 3e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 37 0.003
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.28
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.65
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.86
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.86
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 2.6
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.6
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 26 6.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/57 (36%), Positives = 21/57 (36%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPP 698
PPPPA P P PP PP PPPG PPP PPP
Sbjct: 734 PPPPAVI-------VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/60 (38%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +3
Query: 696 GGGGFXXGGGXPXPXPG--GGXGGXXXXXSPXGGVXXXAXGXXXGXXPXXPTGXSAGGGG 869
G GGF G G P P PG GG GG GG G G P G G GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG--HGGFGGGPGGFEGGPGGFGGGPGG 246
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Frame = +1
Query: 694 SGGGVSXXGGGXXXPXPG-------GGXGAXXXXXPXXGGXLXXPXGXXXGXPXXXPXAX 852
+GGG GGG P PG GG G GG P G G
Sbjct: 186 NGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245
Query: 853 RRGGGV 870
GGG+
Sbjct: 246 GFGGGL 251
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 696 GGGGFXXGGGXPXPXPGGGXGGXXXXXSPXGGVXXXAXGXXXG 824
G GGF G G PGG GG GG G G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPP 698
P P PV P PP + PP PPP P P PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = -3
Query: 865 PPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXG-XGXPPPXXKPPPPR 692
P A PV P P PP PP P P G PPP PP P+
Sbjct: 1145 PSVAAPPVPAPSGAPPV-PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Score = 29.1 bits (62), Expect = 0.86
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPP 698
P P PV P P PP + PP P P P P PP
Sbjct: 1077 PAPSGAPPVPAPSGIPPV-PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = -3
Query: 862 PPAXXPVGXXGXXPXXXPXAXXX-TPPXGEXXXXXPPXPPPGXGXGX-PPPXXKPPPP 695
PP P G P P A PP E PP P P G PPP PP P
Sbjct: 1169 PPVPAPSS--GIPPVPKPAAGVPPVPPPSEA----PPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -3
Query: 862 PPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPP 698
PP P G P P PP + PP PPP P P PP
Sbjct: 1179 PPVPKPAA--GVPPVPPPSE---APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = -3
Query: 862 PPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPPPR 692
P + P P P PP PP P P P P PP P+
Sbjct: 999 PVSTSPAAPLARVPPV-PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/57 (26%), Positives = 16/57 (28%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPP 698
P P PV P PP + PP P P P P PP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVP-VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 242 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 343
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.65
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 760 PPXPPPGXGXGXPPPXXKPPPP 695
PP PPP G P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPP 698
P P P+G P P + PP PP PP PPP P P
Sbjct: 433 PSAPPSLPMGAPAAPPL--PPSAPIAPPLPAGMPAAPPLPPAAPA---PPPAPAPAP 484
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = -2
Query: 866 PPPRRXAXGXXXGXPXXXPXGXXXXPPXXGXXXXXAPXPPPGXGXXXPPPXXETP 702
PP RR G PP P PP G PPP P
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPP-PGXGXGXPP-PXXKPPPP 695
P PP+ P P P P P PP P PP P P PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 760 PPXPPPGXGXGXPPPXXKPPP 698
PP PPP G PP P P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRP 274
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 867 PPPPPXGXWXXXGXAPXXPXGXXXXPP 787
PPPPP G P P G PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/58 (25%), Positives = 15/58 (25%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXXPPXPPPGXGXGXPPPXXKPPPP 695
P P P P P PP PP P PP PPP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 0.86
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 757 PXPPPGXGXGXPPPXXKP 704
P PP G G G PPP +P
Sbjct: 129 PPPPAGFGRGAPPPGFRP 146
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 420 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMHN 557
RA +++ + +KR DI + DNW ND+ C + G +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 320 FPCVPTQSFVDPIHLKICQYPHGGL 246
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 5 GFTRDSFNRSVVIKCRRLILFXLPVSPHLCYS 100
GF RD FN I C L+ F + + C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Frame = -3
Query: 868 PPPPAXXPVGXXGXXPXXXPXAXXXTPPXGEXXXXX--PPXPPPGXGXGXPPPXXKPPPP 695
PP PA P P P PP + PP P P P PPPP
Sbjct: 151 PPSPASAP-----PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,752
Number of Sequences: 5004
Number of extensions: 63993
Number of successful extensions: 271
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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