Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_P16
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 33 0.22
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
12_01_0524 - 4167867-4168445 29 3.7
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 4.8
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 29 4.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.5
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 385 HQPSAAAPLPCVPTQSFVDPIHLKVCLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 221
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 438 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 590
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 382 QPSAAAPLPCVPTQSFVDPIHLKVCLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 203
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 202 CEERVDHEGQ*C 167
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = -3
Query: 843 RGPXHPRXXRXRGXPGEHGXXPPXRXPGXVSXRHXGTMPXGAS-TSXPFXAXXPHXPXPS 667
RGP R RG + G PP G + R P GA+ TS P P S
Sbjct: 318 RGPGSSRPADARGKRKQGGTPPPSPPRGGGAARASNRRPEGAAPTSQPEGERKKKRPPRS 377
Query: 666 H 664
H
Sbjct: 378 H 378
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 458 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEGL 309
ER + R+A PR A + P++ + SPT S S+ C N F+G+
Sbjct: 9 EREGDEGVWKRVARPRFAKKASPQSLREFSSPTS--SPSIACSGNLFDGM 56
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 283 VRVHRANTGRPSNELDRQTTELERRGVGLQHLAGVLGTL 399
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 118 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 258
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 467 GRGERSPRRWLQPRLAVPRQASTSVPRTP 381
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 464 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 342
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,576
Number of Sequences: 37544
Number of extensions: 541637
Number of successful extensions: 1606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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