Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_P09
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.81
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.81
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.81
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.81
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.81
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.81
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.81
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.81
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 28 1.4
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 3.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.7
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 7.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 7.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 7.6
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 26 7.6
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 7.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI + E+H+ + DD I+ + + H
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 1.4
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
Frame = +1
Query: 277 NPTKSTAVLFKRGRPPNTTLS----IPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLG 444
+P KS+ + ++ ++ LS P R + PAP RP++ P+
Sbjct: 267 SPMKSSRDISRKPSMASSVLSPSDYFPQHRRFQSAPAPIPRPVSTLI-PLTQVRTTASNV 325
Query: 445 VTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPGHXLCKCS 624
+ + T RP + L + + + RR + + P H + +
Sbjct: 326 IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRRGSSKRKPSLQPTPPVSYPAHNVPQKG 385
Query: 625 VRSRGPHTLK 654
VR PHTLK
Sbjct: 386 VRPASPHTLK 395
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 422 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 532
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 435 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 340
F+L Y L +W GG GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 483 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 379
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 319 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 450
PP + + P PT NTPA T+ IP P V +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI E+H+ + D+ I+ + + H
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKH 581
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI E+H+ + D+ I+ + + H
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKH 581
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +1
Query: 70 VPQGSAXLPXYYSVCISTIYPGSPETHLALFADDTAIYYSCRKKALLH 213
+P G + P ++ I+TI E+H+ + D+ I+ + + H
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKH 581
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 255 EPLSHGGSYGLKSSMKQRLLPTRVVDGGVIGE 160
E L+HGGS+ + + + Q LL R+ +I E
Sbjct: 372 EDLNHGGSHKINNCIGQILLAKRLGKNRIIAE 403
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 253 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 348
F+ W+ P+ S +L ++G PP + LS L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,114
Number of Sequences: 5004
Number of extensions: 69535
Number of successful extensions: 217
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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