Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_P06
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754...    31   0.93 
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    31   1.6  
07_03_1107 - 24024387-24024497,24025799-24026410                       29   3.7  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   3.7  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.6  
02_01_0054 - 404464-405152,406087-406618                               28   8.6  

>10_07_0195 +
           13972656-13972970,13973518-13973848,13975312-13975463,
           13975573-13976280,13976424-13976615,13977264-13977425
          Length = 619

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 467 ITAPSPGIKR---LDISTPIFYAGXTIGPTTCRLARSRFGSXXGTIVTKMD 610
           +T+ SP +     + +  PIFYA   IGPT  R+   R  S    ++  +D
Sbjct: 492 LTSQSPAVTSQVIMKMQVPIFYAEAVIGPTGARIDYIRQASGSSVVIKDLD 542


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/80 (28%), Positives = 30/80 (37%)
 Frame = +1

Query: 133 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 312
           CG        V H  L    V   LP R     +   A   C  + +R HR ++ RS   
Sbjct: 20  CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79

Query: 313 LDRQTTELERRESGAAALGW 372
             R++  L RR      LGW
Sbjct: 80  CRRRSPRLWRRSGSGFLLGW 99


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 459 TGAESVVPRRWLQPRLAVPRQASTSVPRTPAKCCSPTLPA 340
           T A +  P     P  + P  A+ + P TPA   +PT PA
Sbjct: 43  TPAPAAAPTTTTPPAASTPPAAAPTTPATPAPAEAPTTPA 82


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 440 SPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLSLRSNSVVCRSNS 309
           S  GGCS    +   PP AFRG+  +   P+    + V CR+ S
Sbjct: 65  SASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 106 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 246
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 379 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 221
           E  S  + P    V +  +VDP  L       K  +YS G L L  ++ S   G    D 
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319

Query: 220 GVGGGVPIVRCEERVDHEG 164
           G GGG    R   RV  EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,746
Number of Sequences: 37544
Number of extensions: 419088
Number of successful extensions: 1099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)