Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_P06
         (889 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    33   0.012
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    27   0.76 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    27   1.0  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    27   1.0  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    27   1.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    27   1.0  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    26   1.3  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    26   1.8  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   7.1  
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           23   9.4  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   9.4  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   9.4  

>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 33.1 bits (72), Expect = 0.012
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 182 LLATYD---RDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGRV 352
           LL  YD   R S   +   V   + + H  I E +ST+ +   ++ +W D +L+WN    
Sbjct: 46  LLKGYDPSIRPSQHYNVTTVETGITITHVEINEIKSTLSVYGWMKFSWNDPKLTWNPASY 105

Query: 353 G 355
           G
Sbjct: 106 G 106


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 0.76
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 354 GCSTWLVSSERLWRPDVVLLN 416
           G  T  V SE +W PD+VL N
Sbjct: 94  GVDTLHVPSEHIWLPDIVLYN 114


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 170 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 334
           ++++LLATY+    P       + V   L L+   ++ E    +   A L + W D  L 
Sbjct: 27  LLNNLLATYNTLERPVANESDPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLR 86

Query: 335 WNAGRVG 355
           WN    G
Sbjct: 87  WNDSEYG 93


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 372 VSSERLWRPDVVLLN 416
           V S+ +WRPD+VL N
Sbjct: 104 VPSDHIWRPDIVLYN 118


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 372 VSSERLWRPDVVLLN 416
           V S+ +WRPD+VL N
Sbjct: 104 VPSDHIWRPDIVLYN 118


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 372 VSSERLWRPDVVLLN 416
           V S+ +WRPD+VL N
Sbjct: 100 VPSDHIWRPDIVLYN 114


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 348 EWGCSTWL-VSSERLWRPDVVLLN 416
           E+G  T L V SE +W PD+VL N
Sbjct: 103 EYGGVTELYVPSEHIWLPDIVLYN 126


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 354 GCSTWLVSSERLWRPDVVLLN 416
           G     V SE++W PD+VL N
Sbjct: 100 GVEMLYVPSEQIWLPDIVLYN 120


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +2

Query: 170 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 334
           ++++LLATY+    P       + V   L L+   ++ E    +     L + W D  L 
Sbjct: 27  LLNNLLATYNTLERPVANESDPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLR 86

Query: 335 WNAGRVG 355
           WN    G
Sbjct: 87  WNDSEYG 93


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 335 WNAGRVGLQHLAGVLGTLVEA 397
           WN  ++G QH+ GVLG  + A
Sbjct: 378 WN--KLGRQHMLGVLGNEIAA 396


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 381 ERLWRPDVVLLN 416
           +++W+PD+VL N
Sbjct: 106 DKVWKPDIVLFN 117


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 372 VSSERLWRPDVVLLN 416
           +   RLW+PDV++ N
Sbjct: 83  IPPHRLWKPDVLMYN 97


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,836
Number of Sequences: 2352
Number of extensions: 14323
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95507181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)