Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_P05
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.45 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   5.6  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   7.4  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   7.4  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   9.7  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 445 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSL-----RNKVTLYKTCIRPG 609
           LG++    M +  H   + D+   +LGR+ P+LCSR  + +       K TL KT  + G
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSRGHVYVVGEANSGKSTLLKTLAKRG 233

Query: 610 HDV 618
           + V
Sbjct: 234 NGV 236


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 249  HPGTVVPEVANRHQPHEKRS 308
            HP  VV +VAN + PH K S
Sbjct: 1284 HPERVVLKVANSYYPHSKAS 1303


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 319 KRGRP-PNITSSIPLRSRRANTSAVSP 396
           KR RP PNI +S P  +R  +T  V+P
Sbjct: 128 KRDRPLPNIRNSAPSATRSHSTPCVAP 154


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +1

Query: 127 YINDIPRSPETHLALFADDTAIYYSCRKMSLLHR 228
           Y+ ++ +SP+ +L +  D++ I    + +S+LH+
Sbjct: 516 YLLELEKSPKNNLLISMDESVIEIVQKSLSVLHK 549


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/53 (20%), Positives = 25/53 (47%)
 Frame = -1

Query: 651 VRAA*ANTTLAYVMTGAYASFVESYLIAEGQFASTTKHWIESS*NKRGAVAYR 493
           + A   N+  + +++G + S    YL+  G+    + +W+ +  N   A+  R
Sbjct: 75  IEAILGNSEASKLISGTFHSIAYKYLVKYGKHIGLSSNWLIADRNDTQAIMKR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,514
Number of Sequences: 5004
Number of extensions: 66036
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)