Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_P04
         (812 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.      58   4e-08
BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.     58   4e-08
AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.      58   4e-08
BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1...    51   4e-06
AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.     51   4e-06
AK027872-1|BAB55422.1|  509|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AF103426-1|AAD19426.1|  104|Homo sapiens immunoglobulin kappa li...    31   3.7  
AK123671-1|BAC85674.1|  520|Homo sapiens protein ( Homo sapiens ...    31   5.0  
BC146775-1|AAI46776.1| 1320|Homo sapiens TNRC15 protein protein.       31   6.5  
AY176045-1|AAO46889.1| 1299|Homo sapiens Grb10 interacting GYF p...    31   6.5  
AK092764-1|BAC03970.1|  575|Homo sapiens protein ( Homo sapiens ...    31   6.5  
AK001739-1|BAA91873.1| 1100|Homo sapiens protein ( Homo sapiens ...    31   6.5  
AK001240-1|BAA91576.1|  328|Homo sapiens protein ( Homo sapiens ...    31   6.5  
AB014542-1|BAA31617.2| 1329|Homo sapiens KIAA0642 protein protein.     31   6.5  
AY320819-1|AAQ22112.1|   77|Homo sapiens immunoglobulin kappa ch...    30   8.7  
AB011174-1|BAA25528.1|  962|Homo sapiens KIAA0602 protein protein.     30   8.7  

>BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.
          Length = 318

 Score = 58.0 bits (134), Expect = 4e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +1

Query: 625 YACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVXAIDTXMCYTTAG 798
           Y CC +  GS GC VA+ HV  G +  ++G +E + +  +R    G+ A+D  MCYTT G
Sbjct: 98  YTCCAAAPGSVGCQVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHG 157

Query: 799 LEL 807
           LEL
Sbjct: 158 LEL 160



 Score = 39.1 bits (87), Expect = 0.019
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 504 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS 614
           D+   +C RC   + ++  G  V+++ C YHWGRV S
Sbjct: 51  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRS 87


>BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.
          Length = 347

 Score = 58.0 bits (134), Expect = 4e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +1

Query: 625 YACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVXAIDTXMCYTTAG 798
           Y CC +  GS GC VA+ HV  G +  ++G +E + +  +R    G+ A+D  MCYTT G
Sbjct: 127 YTCCAAAPGSVGCQVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHG 186

Query: 799 LEL 807
           LEL
Sbjct: 187 LEL 189



 Score = 39.1 bits (87), Expect = 0.019
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 504 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS 614
           D+   +C RC   + ++  G  V+++ C YHWGRV S
Sbjct: 80  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRS 116


>AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.
          Length = 318

 Score = 58.0 bits (134), Expect = 4e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +1

Query: 625 YACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVXAIDTXMCYTTAG 798
           Y CC +  GS GC VA+ HV  G +  ++G +E + +  +R    G+ A+D  MCYTT G
Sbjct: 98  YTCCAAAPGSVGCQVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHG 157

Query: 799 LEL 807
           LEL
Sbjct: 158 LEL 160



 Score = 39.1 bits (87), Expect = 0.019
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 504 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS 614
           D+   +C RC   + ++  G  V+++ C YHWGRV S
Sbjct: 51  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRS 87


>BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1
            homolog (S. cerevisiae) protein.
          Length = 1221

 Score = 51.2 bits (117), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 625  YACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVRARS--PRGGVXAIDTXMCYTTAG 798
            Y CC +  GS GC VA+ HV  G +  + G ++ + +  S     G+ A+D  M YTT G
Sbjct: 1014 YMCCSAAAGSVGCQVAKQHVQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYG 1073

Query: 799  LEL 807
            LEL
Sbjct: 1074 LEL 1076



 Score = 36.7 bits (81), Expect = 0.100
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 522  CVRCDKMFRMTRDGEYVKEETCLYHWGRV 608
            C RC   + ++  G  +++E C YHWGR+
Sbjct: 973  CCRCGTEYLVSSSGRCIRDEECYYHWGRL 1001


>AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.
          Length = 1239

 Score = 51.2 bits (117), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 625  YACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVRARS--PRGGVXAIDTXMCYTTAG 798
            Y CC +  GS GC VA+ HV  G +  + G ++ + +  S     G+ A+D  M YTT G
Sbjct: 1032 YMCCSAAAGSVGCQVAKQHVQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYG 1091

Query: 799  LEL 807
            LEL
Sbjct: 1092 LEL 1094



 Score = 36.7 bits (81), Expect = 0.100
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 522  CVRCDKMFRMTRDGEYVKEETCLYHWGRV 608
            C RC   + ++  G  +++E C YHWGR+
Sbjct: 991  CCRCGTEYLVSSSGRCIRDEECYYHWGRL 1019


>AK027872-1|BAB55422.1|  509|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14966 fis, clone THYRO1000034, weakly similar to
           TRICHOHYALIN. ).
          Length = 509

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 375 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFR 548
           PPP P P T    ++  F   +Q      S  ST  S +DEE D    L ++  K  R
Sbjct: 277 PPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTSSSSADEEFDPQLSLQLKEKKTLR 334


>AF103426-1|AAD19426.1|  104|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 104

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 34  ARTSNSSSALVFRLYVYTSQPRN--MHFCIQFHDW 132
           AR S S S   F L + + QP +  +++C Q+HDW
Sbjct: 57  ARFSGSGSGTEFTLTITSLQPEDFAVYYCQQYHDW 91


>AK123671-1|BAC85674.1|  520|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41677 fis, clone HCASM2002918. ).
          Length = 520

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 375 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 506
           PPP P P T    ++  F   +Q      S  ST  S +DEE D
Sbjct: 464 PPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTSSSSADEEFD 507


>BC146775-1|AAI46776.1| 1320|Homo sapiens TNRC15 protein protein.
          Length = 1320

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +3

Query: 327 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 506
           PL   P+ T + + I PPP P P  T     P   P   G  G GS+ + P    DEE  
Sbjct: 457 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 507

Query: 507 AVEHLCVRCDKMFRMTRD 560
            ++HL  + +KM    +D
Sbjct: 508 GLKHLEQQAEKMVAYLQD 525


>AY176045-1|AAO46889.1| 1299|Homo sapiens Grb10 interacting GYF
           protein 2 protein.
          Length = 1299

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +3

Query: 327 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 506
           PL   P+ T + + I PPP P P  T     P   P   G  G GS+ + P    DEE  
Sbjct: 436 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 486

Query: 507 AVEHLCVRCDKMFRMTRD 560
            ++HL  + +KM    +D
Sbjct: 487 GLKHLEQQAEKMVAYLQD 504


>AK092764-1|BAC03970.1|  575|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35445 fis, clone SMINT2003551, weakly similar to
           Drosophila melanogaster La related protein (larp) mRNA.
           ).
          Length = 575

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 375 PPPRPRPMTTWD--VNAPEFVPGSQGDSGRGSLGSTPRSDS 491
           PPPR  P T +   ++ PEFVPG    S   S  ++PR  S
Sbjct: 253 PPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGS 293


>AK001739-1|BAA91873.1| 1100|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10877 fis, clone NT2RP4001861. ).
          Length = 1100

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +3

Query: 327 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 506
           PL   P+ T + + I PPP P P  T     P   P   G  G GS+ + P    DEE  
Sbjct: 436 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 486

Query: 507 AVEHLCVRCDKMFRMTRD 560
            ++HL  + +KM    +D
Sbjct: 487 GLKHLEQQAEKMVAYLQD 504


>AK001240-1|BAA91576.1|  328|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10378 fis, clone NT2RM2002004, weakly similar to
           LA PROTEIN HOMOLOG. ).
          Length = 328

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 375 PPPRPRPMTTWD--VNAPEFVPGSQGDSGRGSLGSTPRSDS 491
           PPPR  P T +   ++ PEFVPG    S   S  ++PR  S
Sbjct: 106 PPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGS 146


>AB014542-1|BAA31617.2| 1329|Homo sapiens KIAA0642 protein protein.
          Length = 1329

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +3

Query: 327 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 506
           PL   P+ T + + I PPP P P  T     P   P   G  G GS+ + P    DEE  
Sbjct: 466 PLSQIPSDTASPLLILPPPVPNPSPTL---RPVETP-VVGAPGMGSVSTEP---DDEE-- 516

Query: 507 AVEHLCVRCDKMFRMTRD 560
            ++HL  + +KM    +D
Sbjct: 517 GLKHLEQQAEKMVAYLQD 534


>AY320819-1|AAQ22112.1|   77|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 77

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   YWISTAPARAIARTSNSSSALVFRLYVYTSQPRNM--HFCIQFHDW 132
           Y  ST      AR S S S   F L + + Q  +   ++C Q+HDW
Sbjct: 27  YGASTRATGISARFSGSGSGTEFTLTISSLQSEDFATYYCQQYHDW 72


>AB011174-1|BAA25528.1|  962|Homo sapiens KIAA0602 protein protein.
          Length = 962

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 375 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPR 482
           PPP  RP     V  P   PG +G  G G++    R
Sbjct: 29  PPPSARPARPPRVRGPAAAPGRRGSGGAGAMAERGR 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,499,640
Number of Sequences: 237096
Number of extensions: 2807103
Number of successful extensions: 11108
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11099
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)