Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_O23
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.039
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.16 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    29   0.64 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/60 (33%), Positives = 21/60 (35%)
 Frame = -1

Query: 855 PPPXXXAXXPXXNPKXPPPXXPXXXXXPAXGXXAPPPXXPXSXTGHPPRKGXGPPALSRG 676
           PPP      P   P   P   P     P  G   PPP  P      PP     PPA+S G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = -1

Query: 852  PPXXXAXXPXXNPKXPPPXXPXXXXXPAXGXXAPPPXXPXSXTGHPPRKG 703
            PP   A  P   P   PP  P     PA    APPP  P S     P  G
Sbjct: 1699 PPQMSAPTPPPPPMSVPP-PPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 206 VRVHRANTGRSSNELDRQTTELERR 280
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 807 PPPXXPXXXXXPAXGXXAPPPXXPXSXTGHPPRKGXGPP 691
           PPP  P     PA    APP       T +PP++   PP
Sbjct: 206 PPPPPPQQNYPPAASSSAPP--MQYQQTAYPPQQAPYPP 242


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/56 (26%), Positives = 17/56 (30%)
 Frame = -1

Query: 852 PPXXXAXXPXXNPKXPPPXXPXXXXXPAXGXXAPPPXXPXSXTGHPPRKGXGPPAL 685
           PP      P   P  P    P     P      PPP  P +    PP     P A+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV 194



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -1

Query: 855 PPPXXXAXXPXXNPKXPPPXXPXXXXXPAXGXXAPP--PXXPXSXTGHPPRKGXGPPALS 682
           PPP   +  P  +   P P        PA    +PP  P  P +    PP+    PP LS
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK--VPPPPLS 207

Query: 681 R 679
           +
Sbjct: 208 Q 208


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = -1

Query: 852 PPXXXAXXPXXNPKXP--PPXXPXXXXXPAXGXXAPPPXXPXSXTGHPPRKGXGPPA 688
           PP      P   P  P  PP  P     PA    APP   P +    PP     P A
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP--LPPAAPAPPPAPAPAPAA 486


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 699 GPPALSRGLSGXHXEHCHGSFHLAPVXXXHPXWTEPS 589
           G  AL  G+SG H     G    AP+   HP  TEP+
Sbjct: 102 GGLALRYGISGTHRHKLAGVIAQAPMLRCHPD-TEPN 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,684
Number of Sequences: 5004
Number of extensions: 57680
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)