Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_O13
(834 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 38 2e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 30 0.030
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 27 0.21
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.65
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.65
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.65
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 1.1
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 23 2.6
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.5
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 4.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 4.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 8.0
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 37.5 bits (83), Expect = 2e-04
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---PKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD P V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAG 316
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDPKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNA 313
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.9 bits (64), Expect = 0.030
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DPKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWNAGGVGLQHL 337
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.1 bits (57), Expect = 0.21
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DPKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D VV + + +R + I + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 299 LSWNAGGVGLQHL 337
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.49
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNA---GGVGLQHL 337
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 325
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 24.6 bits (51), Expect = 1.1
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -1
Query: 363 STSVPRTPAKCCSPTPPAFQLSRLSIQFI*RSACIRTVDSDS-RMLACLKCRVRLTTILG 187
+T+ P T + TPP Q+ + + + + + V+ + L L+ VR +T+ G
Sbjct: 674 TTTTPNTTQNASATTPPP-QVDEVDDKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEG 732
Query: 186 SGGES-RSYVARSE 148
SGG+S R+ + R +
Sbjct: 733 SGGDSLRTLLQRGQ 746
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 157 RNVRSGLPPRPQNRSQPDPAFETC*H 234
R V + PP+PQ +++P + H
Sbjct: 243 RKVHATKPPKPQTKTKPTSPYHVSDH 268
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVV 377
G T V SE +W PD+V
Sbjct: 91 GVDTLHVPSEHIWLPDIV 108
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 342 VSSERLWRPDVV 377
V S+ +WRPD+V
Sbjct: 105 VPSDHIWRPDIV 116
Score = 22.2 bits (45), Expect = 6.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 321 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 229
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 342 VSSERLWRPDVV 377
V S+ +WRPD+V
Sbjct: 105 VPSDHIWRPDIV 116
Score = 22.2 bits (45), Expect = 6.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 321 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 229
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 3.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 342 VSSERLWRPDVV 377
V S+ +WRPD+V
Sbjct: 101 VPSDHIWRPDIV 112
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 191 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHLAGVL----GTL 358
+ ++N L + + + ++ + D + N + + S AGGV + AG++ GTL
Sbjct: 239 RAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMCQPVGTL 298
Query: 359 V 361
+
Sbjct: 299 I 299
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVV 377
E+G T L V SE +W PD+V
Sbjct: 88 EYGGVTELYVPSEHIWLPDIV 108
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 6.1
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYDRDSPP-----DPKIV-VNLTLHLRHANIRESEST 253
A+A++ + +++ LL TY+ P +P ++ LTL ++ ++ E
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTL-MQIIDVDEKNQL 69
Query: 254 VRIQADLQMNWIDKRLSWNAGGVG 325
+ L++ W D + WN G
Sbjct: 70 LITNLWLKLEWNDVNMRWNVSDYG 93
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVV 377
G V SE +W PD+V
Sbjct: 104 GVEMLYVPSENIWLPDIV 121
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,394
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 27
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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