Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_O08
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 296 PPPPPPRGG 270
           PPPPP RGG
Sbjct: 376 PPPPPIRGG 384


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 296  PPPPPPRGG 270
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 296  PPPPPPR 276
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 286 PPPGGXPXXP 257
           PPPGG P  P
Sbjct: 46  PPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 483 GGXXPPXGGAPXRP 442
           GG  PP  GAP  P
Sbjct: 406 GGQLPPSAGAPMPP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,284
Number of Sequences: 438
Number of extensions: 4195
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)