Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_O04
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   1.7  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    27   2.3  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   3.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   4.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   7.0  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.3  

>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 535 SLPTRTSPRCDAGSARSQSELFNDTSQS 618
           S+PT TSP  +  + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 119 C*QNYLMMQDYFDLVIKFEMESKKGPAEAGIRLWQ 15
           C   YL+  D  + V+ F+ +S     +AGIR +Q
Sbjct: 68  CTSGYLLSLDKMNKVVSFDPDSLSITVQAGIRFYQ 102


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = +1

Query: 352 HRH--PQRKRTTHLGDRSSKVSV*LQPL----PHPSNRNTPLLHGRNRQGDGTRAVDGTT 513
           HRH  P  +  + L ++ S +S    PL    P+PSN N  + H +      +R+     
Sbjct: 45  HRHMFPLARIRSELSEQDSSISFTHDPLHIPLPNPSNNNDNIFHPQVHSSFHSRSASRQR 104

Query: 514 EHPSGATSLPTRTSPR 561
                + S  TR S R
Sbjct: 105 RRSGLSRSNATRYSRR 120


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 137 QDILPGCIFVRQVAARALSECVRVKIKSTPSNTSTTLNGPLSFVS 271
           + I+  C FVR    +++  C   K          T+NG LSF S
Sbjct: 132 EGIVTRCSFVRPKVIKSVHYCEATKRHHFKQYADATMNGGLSFQS 176


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/73 (24%), Positives = 26/73 (35%)
 Frame = +1

Query: 493 RAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTXRRALTQVQPERGGSN 672
           R V+GT+      +S+ ++    C          +F D S S     A  Q+   R G N
Sbjct: 468 RLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQLPQSRAG-N 526

Query: 673 IXSPCWXRGLVVW 711
           I       G   W
Sbjct: 527 IDFSALVLGTSFW 539


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 508 TTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT 609
           TT  P+  T+  TRT+PR  A +  S     N T
Sbjct: 149 TTSTPTTTTARTTRTTPRPTATTNTSNQSTSNST 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,432
Number of Sequences: 5004
Number of extensions: 58282
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)