Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_O04
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006675-8|AAK84554.1| 414|Caenorhabditis elegans Hypothetical ... 30 1.6
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 30 2.2
AY204206-1|AAO39207.1| 477|Caenorhabditis elegans nuclear recep... 29 2.9
AY204205-1|AAO39206.1| 141|Caenorhabditis elegans nuclear recep... 29 2.9
AF039048-15|AAK68332.2| 477|Caenorhabditis elegans Nuclear horm... 29 2.9
AF039048-14|AAM29674.1| 435|Caenorhabditis elegans Nuclear horm... 29 2.9
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 29 2.9
Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 6.6
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 6.6
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 28 6.6
>AC006675-8|AAK84554.1| 414|Caenorhabditis elegans Hypothetical
protein M02H5.4 protein.
Length = 414
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 514 P*CHRP-HGYHHPAYFCREAVVYF 446
P C++P HG H AY CR V+F
Sbjct: 23 PVCYKPPHGIHFGAYTCRACAVFF 46
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = -3
Query: 665 PPRSGCTCVRARRXVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAPDGCSVVPSTARVP 486
PP GC C R +R V D E + N D D + +VL + S+V + +P
Sbjct: 59 PPMCGCGCGRKKRSVDDVE-GVINMDSDVECNNEELREVLENNMKSTPSDSLVSVRSNLP 117
Query: 485 SPCLFLP*SSGV 450
+ F+ + G+
Sbjct: 118 TDQYFVTCTHGL 129
>AY204206-1|AAO39207.1| 477|Caenorhabditis elegans nuclear receptor
NHR-117 protein.
Length = 477
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -1
Query: 508 CHRP-HGYHHPAYFCREAVVYF 446
C++P HGYH A+ CR +F
Sbjct: 37 CYQPGHGYHFGAFICRACAAFF 58
>AY204205-1|AAO39206.1| 141|Caenorhabditis elegans nuclear receptor
NHR-117 protein.
Length = 141
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -1
Query: 508 CHRP-HGYHHPAYFCREAVVYF 446
C++P HGYH A+ CR +F
Sbjct: 37 CYQPGHGYHFGAFICRACAAFF 58
>AF039048-15|AAK68332.2| 477|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 117, isoform b protein.
Length = 477
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -1
Query: 508 CHRP-HGYHHPAYFCREAVVYF 446
C++P HGYH A+ CR +F
Sbjct: 37 CYQPGHGYHFGAFICRACAAFF 58
>AF039048-14|AAM29674.1| 435|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 117, isoform a protein.
Length = 435
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -1
Query: 508 CHRP-HGYHHPAYFCREAVVYF 446
C++P HGYH A+ CR +F
Sbjct: 37 CYQPGHGYHFGAFICRACAAFF 58
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 430 PHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGA--TSLPTRTSPRCDAGSARSQSELFN 603
P P + P++ G RQG +A TT + S+ T P SA +Q + +
Sbjct: 94 PPPPASSAPIV-GAPRQGATPQAAPATTPATTSQHQQSIATPKPPVVRPPSAATQQQPVS 152
Query: 604 DTSQSPTXRRALTQVQPERGGS 669
TSQ+ ++ Q+Q +R +
Sbjct: 153 VTSQASQQQQQFQQIQQQRAAA 174
>Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical
protein R05A10.3 protein.
Length = 387
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 484 DGTRAVDGTTEHPSGATSLP 543
D TR DG+T++P G+T +P
Sbjct: 172 DYTRYTDGSTDYPGGSTDVP 191
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 505 GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTXRRALTQVQPERGGSNIXS 681
G++ PSG+++ P+ +S S S SEL N ++ S T +++ P S+ S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 505 GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTXRRALTQVQPERGGSNIXS 681
G++ PSG+++ P+ +S S S SEL N ++ S T +++ P S+ S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 505 GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTXRRALTQVQPERGGSNIXS 681
G++ PSG+++ P+ +S S S SEL N ++ S T +++ P S+ S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 505 GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTXRRALTQVQPERGGSNIXS 681
G++ PSG+++ P+ +S S S SEL N ++ S T +++ P S+ S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 258 KGPFKVVEVLDGVDLILTLTHSLKARAATCLTKIQPGKISWPTIKEMLTKL 106
+GP VE ++ +D+ L + ++ A K P K++W I +TKL
Sbjct: 815 RGPTSFVEEMEFIDVKLAIQSNITRVLAHRQKKFPPQKLAWFHIIGKITKL 865
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,807
Number of Sequences: 27780
Number of extensions: 353578
Number of successful extensions: 870
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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