Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_O03
(1054 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0299 - 17051570-17052474,17053542-17053755 29 2.0
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 25 2.5
03_02_0657 + 10225503-10226114,10226563-10226879,10226977-102270... 25 4.3
02_05_0686 - 30900748-30902167,30903442-30904742 24 5.2
07_03_1382 - 26170563-26170631,26171151-26171843 24 5.8
05_01_0131 + 888247-888771,889092-889154 24 6.0
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 29 6.2
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 29 8.2
01_01_0046 - 331758-332627 29 8.2
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 861 PXXXXFFXXXXXPPPPPPPP 802
P F+ PPPPPPPP
Sbjct: 311 PPLPSFYPSPPPPPPPPPPP 330
Score = 26.6 bits (56), Expect(2) = 2.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 825 PPPPPPPP 802
PPPPPPPP
Sbjct: 325 PPPPPPPP 332
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -2
Query: 861 PXXXXFFXXXXXPPPPPP 808
P F PPPPPP
Sbjct: 278 PHLPPIFSPPSPPPPPPP 295
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 25.4 bits (53), Expect(2) = 2.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 833 GXXPPPPPPP 804
G PPPPPPP
Sbjct: 270 GFPPPPPPPP 279
Score = 23.4 bits (48), Expect(2) = 2.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 824 PPPPPPPP 801
PPPPPP P
Sbjct: 274 PPPPPPSP 281
>03_02_0657 +
10225503-10226114,10226563-10226879,10226977-10227088,
10227292-10227423,10227519-10227593
Length = 415
Score = 25.4 bits (53), Expect(2) = 4.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 833 GXXPPPPPPP 804
G PPPPPPP
Sbjct: 132 GMAPPPPPPP 141
Score = 22.6 bits (46), Expect(2) = 4.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 824 PPPPPPPP 801
PPPPPP P
Sbjct: 136 PPPPPPLP 143
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 23.8 bits (49), Expect(2) = 5.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 824 PPPPPPP 804
PPPPPPP
Sbjct: 313 PPPPPPP 319
Score = 23.8 bits (49), Expect(2) = 5.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 825 PPPPPPP 805
PPPPPPP
Sbjct: 326 PPPPPPP 332
Score = 23.8 bits (49), Expect(2) = 5.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 821 PPPPPPP 801
PPPPPPP
Sbjct: 326 PPPPPPP 332
Score = 23.8 bits (49), Expect(2) = 5.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 822 PPPPPPP 802
PPPPPPP
Sbjct: 353 PPPPPPP 359
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 23.8 bits (49), Expect(2) = 5.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 824 PPPPPPP 804
PPPPPPP
Sbjct: 184 PPPPPPP 190
Score = 23.8 bits (49), Expect(2) = 5.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 821 PPPPPPP 801
PPPPPPP
Sbjct: 200 PPPPPPP 206
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 825 PPPPPPP 805
PPPPPPP
Sbjct: 133 PPPPPPP 139
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 822 PPPPPPP 802
PPPPPPP
Sbjct: 160 PPPPPPP 166
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 802 GGGGGGGGXXPXXKKP 849
GGGGGGGG P KP
Sbjct: 21 GGGGGGGGFSPTAAKP 36
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 848 GFFXXGXXPPPPPPPP 801
G F G PPPPPP P
Sbjct: 49 GHFRGGLRPPPPPPTP 64
>01_01_0046 - 331758-332627
Length = 289
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 861 PXXXXFFXXXXXPPPPPPPP 802
P +F PPPPPPPP
Sbjct: 9 PPQRYWFPYWTSPPPPPPPP 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,764,050
Number of Sequences: 37544
Number of extensions: 268437
Number of successful extensions: 25287
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8831
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3117811332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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