Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_O02
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   5.4  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   7.2  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   9.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 267  YGAPVWCHALTRQNVAALRRPQRAIAVRAIRG 362
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 463 RYATCNRQRAPPPSRSQ 413
           RY++  R R+PPPSR +
Sbjct: 91  RYSSVGRSRSPPPSRER 107


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = -3

Query: 410 WRPGEQARRLEGDGAVSSDRPDRDRALRTSQRGDVLAGQGVAPYGRAV*CHRPHH 246
           W       R   + A + DR + +R LRT   G  +  +     G+ V    P H
Sbjct: 476 WIRHRAVARAREEDADALDRKEEERELRTRGEGATVETENYVENGKLVTSEMPQH 530


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 186 SESRLSPSAEGPTSQSERGSSTDHP 112
           S+   S  A+GP+SQ+  G ST  P
Sbjct: 508 SKENKSSVADGPSSQAHNGPSTQPP 532


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 389  RRLEGDGAVSSDRPDRDRALRTSQRGDVLAGQGVAPYGR-AV*CHRPHHPHVEAARHLIG 213
            RRLE + A S    +R RA   ++ G  L G+G  P  R    C +  H        L G
Sbjct: 907  RRLEQELAKSQKNWERRRARHAAKEGINLNGEGRKPTTRKCSNCGQVGHMKTNKICPLFG 966

Query: 212  TPD 204
             P+
Sbjct: 967  RPE 969


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 534 PPRVEPPRSXYTFXGAPFPPRAEVATPP 451
           PP   PPRS       P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,777
Number of Sequences: 5004
Number of extensions: 36824
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)