Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_O02
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.1  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.1  
Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical p...    28   8.9  

>U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical
           protein C30G4.5 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 149 LRKVSAEVPPTIQFKAEVPKTGHPDPD 69
           LRKV+ + PPTI  + E PK  +  PD
Sbjct: 9   LRKVNEQQPPTIIEEDETPKRANRPPD 35


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 552 PRLQHGPPRVEPPRSXYTFXGAPFPPRAEVATPPVIG 442
           P +  GPP   PP       G P PP      PP+ G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 552 PRLQHGPPRVEPPRSXYTFXGAPFPPRAEVATPPVIG 442
           P +  GPP   PP       G P PP      PP+ G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 591 GSEAGRRVRQAXRPRLQHGPPRVEPPRSXYTFXGAPFPPRAEVATPP 451
           G+  G   RQA    + H PP V PP+        P P +  VA PP
Sbjct: 259 GARHGSISRQATLTFVSHKPPPVNPPQPAV----PPKPAKISVADPP 301


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 VVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRG 362
           +++  ALYGAP W   L+  N+  L    R+ A+RA  G
Sbjct: 689 LIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 552 PRLQHGPPRVEPPRSXYTFXGAPFPPRAEVATPPVIG 442
           P +  GPP   PP       G P PP      PP+ G
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 339


>Z46787-10|CAA86749.1|  154|Caenorhabditis elegans Hypothetical
           protein C16C10.11 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 301 ARTSPRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHP 414
           A  SP   VRSA   + +S   AP P R  A +P  HP
Sbjct: 7   ASPSPSAPVRSAPRPAAQSSFAAP-PPRPAAAAPAYHP 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,182
Number of Sequences: 27780
Number of extensions: 260607
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)