Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_N05
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.33 
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    29   0.77 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.1  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    27   4.1  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   7.2  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   7.2  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 215 VRVHRANTGRSSNELDRQTTELERR 289
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 168  IVVNPTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVGL 302
            +++NPTLH+   N+  +E   +I+ +++  W+    +  +G  GL
Sbjct: 992  LLLNPTLHVSEENLPMTEELSKIRIEME-EWLVNHSTGGSGLKGL 1035


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 531
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMF 579
           R S N S S +KR  +S+ +S +     +D  +   K  ++ H S  +   I K +    
Sbjct: 31  RSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILKGL--CI 88

Query: 580 ESGGWDVTA 606
           ++GG D  A
Sbjct: 89  KAGGVDPVA 97


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 726 EXGARRQXVSRGASPGKTXGTLPRGXSTSPRSWLCTRTGQSRHIPP 589
           E GA  +  S  AS     G   R    SPR+ + + T +S H PP
Sbjct: 119 ESGAELES-SEPASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHSPP 163


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 478 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 585
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,525
Number of Sequences: 5004
Number of extensions: 60550
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)