Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_N03
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    33   0.034
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    27   3.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.2  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   5.2  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    26   5.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -3

Query: 463 LTNRPAFAVSSKFVKLSAIFSTLVGFR--LSNLLLNPSVHSRCIITDATFTPLQTSY*SG 290
           +++ P F  S KFV L+ + + L  ++  LS+LL+     S+C+   +TF  L   Y   
Sbjct: 99  ISSDPYFVGSGKFVSLAQLEAHLADWKETLSSLLVLQGNISQCLSVASTFQKLHNMYMGS 158

Query: 289 VHHDTRKVL 263
            H + +K++
Sbjct: 159 THLNFKKLV 167


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 21  RVDRHSVHLTKKYFTXIR*KLKPQNRFY 104
           R+D  S  LTK+ F  I  + K +NRFY
Sbjct: 47  RIDAKSNTLTKEIFPKINNEFKIKNRFY 74


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 497 AIPTPYL--RVRTSYKSTSLRSLIQVREALCYL*HFGRLPPLELTPKSFCT 351
           ++PTP L   V T+   TS ++         Y  HF +L PL  TP    T
Sbjct: 460 SLPTPLLGRAVNTTAFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTPPGILT 510


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 579  ERLGDRRVTGSSCTALRTAVAALYPFDD 662
            E L D+R  G+    LR++V  L+P DD
Sbjct: 1187 EELKDKRPYGTLVFVLRSSVLRLFPADD 1214


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 78  KLKPQNRFYVINKLKSHTGANKPKSIVKVTVNVFLCEYNVIS 203
           +L P   FY+ ++  +     K K +  V +N FLCE N ++
Sbjct: 167 RLAPSKLFYLASRF-AFFYMPKEKELGTVLLNAFLCEVNQVT 207


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 724 SRPRSLKTSEKNPVPIFSSTKS 659
           SRP S+  S ++P PI S+T S
Sbjct: 123 SRPSSISNSSESPAPINSATAS 144


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +3

Query: 90   QNRFYVINKLKSHTGANKP-KSIVKVTVN-VFLCEY 191
            Q RFY + ++K+H  +N P K+IVK+  N +F+ +Y
Sbjct: 1079 QARFYDL-EVKNHMKSNNPPKTIVKIDDNDLFIFKY 1113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,144
Number of Sequences: 5004
Number of extensions: 54222
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)