Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_M24
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    37   0.022
12_02_0704 - 22293955-22294255,22294276-22294602,22294794-222948...    29   4.3  
11_06_0130 - 20408835-20411771                                         29   4.3  
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131...    29   4.3  
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661...    28   7.6  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +2

Query: 179 TSFYLVFNKIMSTLKLTSEVRSGLYSHWRDVFEHVRSTAKIKHYADQNTSSCTPQERECS 358
           TS Y +FNK+ STL   S V SG ++  RD      +    + + D+ +SS + ++R  +
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRDTRVSTYAKQGYEIFKDELSSSSSRKKRNHA 223

Query: 359 IRKSCNNVSVTSMEDL 406
              S   V  ++  +L
Sbjct: 224 RHASAGTVEKSTRTEL 239


>12_02_0704 -
           22293955-22294255,22294276-22294602,22294794-22294840,
           22297252-22297316,22297439-22297541
          Length = 280

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +2

Query: 182 SFYLVFNKIMSTLKLTSEVRSGLYSHW---RDVFEHVRSTAKIKHYADQNTSSCTPQERE 352
           + Y + + + +TLK       GL + W   ++ FE  ++T   +  A+Q  +  +  E  
Sbjct: 129 AMYFLRHHLCATLKNEHMATKGLLTLWTTLKEWFEKRKNTTLPQ--AEQEWAHLSVTEYN 186

Query: 353 CSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFT 487
            ++ + C N+S++       E+I  +    H++     R+H   T
Sbjct: 187 SALHQICINLSLSGKVVTDKEKIEKTLSTFHLSAMHSTRNHRRMT 231


>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +3

Query: 387 LPRWKI*ATKKSSHLTFWLMLPSLTVDVITWRSLTEIQHVTSYCKKLRQVQISSETSI 560
           LP+  + +TKK  H    ++L +LTV +++  ++  + ++   C K R+ ++ + TSI
Sbjct: 715 LPQCSLKSTKKKKHQ---ILLIALTVCLVSTLAIFSLLYMLLTCHKRRKKEVPAMTSI 769


>03_06_0014 -
           31012116-31012229,31012773-31012985,31013058-31013171,
           31013909-31014040,31014624-31014692,31014763-31015017,
           31015347-31015520,31016104-31016280,31016999-31017107,
           31017343-31017506,31018221-31018517
          Length = 605

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +2

Query: 221 KLTSEVRSGLYSHWRDVFEHVRSTAKIKHYADQNTSSCTPQERECSIRKSCNNVSVTSME 400
           KLT++  SG Y+  R        T K++ + D+N      +ERE   +    N+  +S  
Sbjct: 371 KLTTDFFSGAYAITRKASTEDEKTIKMQTWIDENDPEKVKEERE---KAEGENIRASSSL 427

Query: 401 DLSHEEIVTSY 433
               E++   Y
Sbjct: 428 QRKREQVKRKY 438


>02_02_0082 +
           6615408-6615606,6615736-6615866,6615957-6616072,
           6617109-6617230,6617353-6617645,6617774-6617875,
           6620437-6620865,6621026-6621775,6621915-6622109
          Length = 778

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 281 VRSTAKIKHYADQNTS-SCTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQF 457
           +RS  K  HYAD N+S  C   +    +RK   +  V  M D + E++V +     V   
Sbjct: 270 LRSPFKEAHYADSNSSEECQSIDEVAKLRKELQDTLV--MYDKACEDLVHAKKKIQVLSS 327

Query: 458 DC 463
           +C
Sbjct: 328 EC 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,516
Number of Sequences: 37544
Number of extensions: 361626
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)