Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_M17
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 33 0.28
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 33 0.28
11_06_0610 - 25449085-25453284 30 2.0
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 30 2.6
02_04_0452 + 23044190-23045227 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
09_04_0109 - 14674980-14675004,14675861-14676468 29 6.0
04_01_0041 - 464695-464850,467485-469029 29 6.0
01_05_0227 - 19512866-19514983 29 6.0
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 29 6.0
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.0
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 91 EEEKALTKEGMAEAAETXKGTISSMNRSSS 2
E+++ LTK G + +ET KG++ S++RS S
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSES 180
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 544 AISATSTRSSNPRFHTPTTPELNIHFHQ---SPERRTKKE 654
A S+T+TR S PR H PTTP ++ + SP R K E
Sbjct: 2 AASSTATRLSPPRLHAPTTPSPHLPLRRSRFSPLRAAKLE 41
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPTTPELNIHFHQSPERRTKKEFAP 663
PP+P A+S P HTP+ PE +SP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/62 (25%), Positives = 23/62 (37%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPTTPELNIHFHQSPERRTKKEFAPGVKAXXXXXXXXXXXX 711
PP+P A+S P HTP+ P+ +SP + +P A
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKST 710
Query: 712 PP 717
PP
Sbjct: 711 PP 712
>08_02_0678 -
19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 592 PTTPELNIHFHQSPERRTKKEFAPGVKAXXXXXXXXXXXXPPRHWAWLKGFXPLI 756
PT P + HQ P RR K + VKA P R+ W+ P+I
Sbjct: 359 PTKP--GVRPHQQPPRRYKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVI 411
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 479 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 601
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 282 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 455
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 456 VEGVNVLATPSSSRITIGGLALMHQ 530
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 482 PFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQNLTSISINPLNAVLKRSSR 661
P + + + R A+ PP R RL P +H PP S + P + ++S+
Sbjct: 32 PKVAASFALRPMVAAAVSPPPRHRLLLPPPPGRCLLHPPPTVAASFTHRPRSPPCLQNSK 91
Query: 662 RGLKPP 679
G PP
Sbjct: 92 SGSPPP 97
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 243 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 419
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 420 TVD 428
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 460 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 368
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/59 (37%), Positives = 26/59 (44%)
Frame = +2
Query: 512 SRPYASSHPPLRSRLHQPDHQIPDSIHQPPQNLTSISINPLNAVLKRSSRRGLKPPLSS 688
S YASS PP R R P P IH P + L + L + L RS+ P SS
Sbjct: 84 STSYASSLPPSRLRRLPPPPPHPRPIHGPQRVLRAFR---LGSALSRSNPSCFTPSPSS 139
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 234 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 414 PVTVDLCWTTADVTVEGVNVLATPSS 491
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,315,528
Number of Sequences: 37544
Number of extensions: 483316
Number of successful extensions: 1399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -