Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_M17
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   1.8  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 518 PYASSHPPLRSRLHQPDHQIPDS 586
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 252 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 356
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 515  RPYASSHPPLRSRLHQPDHQIPDSIHQPPQNLTSISINPLNAVLKRSSRRG 667
            R ++   P     L Q D   P +   PPQ   S    P N+  KR++RRG
Sbjct: 1259 RDHSMMRPRPNHPLLQMDTAPPQNGSDPPQPSESCPAPPKNSSKKRNNRRG 1309


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 526 IKPPSPAISATSTRSSNPRFHTPTTPE 606
           +   SPAI +T+T +++P+  T  TPE
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPE 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,756
Number of Sequences: 27780
Number of extensions: 363562
Number of successful extensions: 1180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)