Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_M16
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 31 0.77
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 29 3.1
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 29 3.1
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 29 3.1
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 29 3.1
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 29 3.1
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 29 3.1
AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical ... 29 3.1
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 29 4.1
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 29 4.1
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 29 4.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.4
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.4
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 28 7.2
U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related (u... 28 9.5
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 28 9.5
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 28 9.5
AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein. 28 9.5
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 9.5
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 499 GTEAGRR----VRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPP 359
GTE+G R RQA + H PP V PP+ A P P + VA PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 219 SRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRS 347
SR + R R S+ +P+P RRR SP + P RRRRS
Sbjct: 429 SRSKSPPAPRRRRSPSQSKSPAPRRRR--SPSKSPQAPRRRRS 469
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 344
A +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 27 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 69
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 567 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRREWS-LRARTTP 406
+R+ R RSR ++ R GR+ S S RRD SS RR+ S R+R+ P
Sbjct: 27 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPP 80
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 344
A +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 55 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 97
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 567 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRREWS-LRARTTP 406
+R+ R RSR ++ R GR+ S S RRD SS RR+ S R+R+ P
Sbjct: 55 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPP 108
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 344
A +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 344
A +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 344
A +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 567 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRREWS-LRARTTP 406
+R+ R RSR ++ R GR+ S S RRD SS RR+ S R+R+ P
Sbjct: 113 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPP 166
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 344
A +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 156
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 567 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRREWS-LRARTTP 406
+R+ R RSR ++ R GR+ S S RRD SS RR+ S R+R+ P
Sbjct: 114 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPP 167
>AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical
protein ZK616.8 protein.
Length = 360
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Frame = -1
Query: 394 PFPPRAE-VATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSQRRD 218
PF P + +TPPV R RLQ Q E D V P+ RA + +
Sbjct: 227 PFSPSKQPTSTPPVSEGNRKRLQTKVVERSNQIES-EMDSFVKKIEPNERRATQYNHSNS 285
Query: 217 VXAGQGVAPYGSPVYC-HRPHHPHVEAARHLIG 122
+ P G+ + HP + R LIG
Sbjct: 286 LSGSNEAVPPGNVKRSPQKATHP-IRTTRSLIG 317
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 380 SRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPSAGL 493
+RG+ RPS V + R ++ + ++ WSR A SAG+
Sbjct: 469 ARGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.1
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Frame = -1
Query: 454 LQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGA 275
L H E PRS + G+ + + A+ G+++LR + A++ +
Sbjct: 280 LHHDEVAYERPRSELSSPGSVYSSHTQ-ASFHTGGTQKLR-NLQRQVEDAHAKKAQLSHQ 337
Query: 274 VSSDRPDRDRALRTSQRRDVXA-----GQGVAPYGSPV--YCHRPHHPHV 146
V R D DR + R+ GQG P G V Y H H H+
Sbjct: 338 VDRQRADNDRMTHANLAREASLKVNKIGQGAKPQGYHVRSYSHEHDHHHL 387
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 29.1 bits (62), Expect = 4.1
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Frame = -1
Query: 454 LQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGA 275
L H E PRS + G+ + + A+ G+++LR + A++ +
Sbjct: 254 LHHDEVAYERPRSELSSPGSVYSSHTQ-ASFHTGGTQKLR-NLQRQVEDAHAKKAQLSHQ 311
Query: 274 VSSDRPDRDRALRTSQRRDVXA-----GQGVAPYGSPV--YCHRPHHPHV 146
V R D DR + R+ GQG P G V Y H H H+
Sbjct: 312 VDRQRADNDRMTHANLAREASLKVNKIGQGAKPQGYHVRSYSHEHDHHHL 361
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 460 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 311
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 460 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 311
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 61 GPSTDGXGRLSEPAASKRRGSRSGGAPPLHGGGAVDGSIRGSR 189
G + G S+P R G R GG GGG DG GSR
Sbjct: 70 GQGSGGQSGGSDPYGQSRGGGR-GGFGGSRGGGGYDGGRGGSR 111
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 460 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 311
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 249 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERG 425
S + RS +P +R+ SP R P RR+RS + + S+ + K ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 249 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERG 425
S + RS +P +R+ SP R P RR+RS + + S+ + K ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572
>U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 17 protein.
Length = 180
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 202 GVAPYGSPVYCHRPHHPHVEAARHLIGTPDVWKQPA 95
G+ YG + + E R L G P+ W+QP+
Sbjct: 137 GLINYGCKTVANSAKGKNAEEMRELFGIPEPWEQPS 172
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 475 RQAARPRLQ--HGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRL 332
++ +RP L+ G R PR+N T AGAP A+ P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 475 RQAARPRLQ--HGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRL 332
++ +RP L+ G R PR+N T AGAP A+ P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
>AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein.
Length = 180
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 202 GVAPYGSPVYCHRPHHPHVEAARHLIGTPDVWKQPA 95
G+ YG + + E R L G P+ W+QP+
Sbjct: 137 GLINYGCKTVANSAKGKNAEEMRELFGIPEPWEQPS 172
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = -1
Query: 625 PXILKRYRXKTPMAGQHLRQPEGEASAXAAHPVREDRTDRLDGTEAGRRVRQAARPRLQH 446
P KR + P AG ++ + A++ V+E+ D+ + T G RQ
Sbjct: 1210 PAPTKRKASEAPSAGVATKKGKAMAASVDEIQVKEEEEDQKEET-VGSVERQE------- 1261
Query: 445 GPPRVEPPRSNYTFAGAPFPPRAEVATPP 359
PP+ +P ++ A AP PP + PP
Sbjct: 1262 -PPK-KPVADDHKSAIAPLPPANTIMPPP 1288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,946
Number of Sequences: 27780
Number of extensions: 272944
Number of successful extensions: 1210
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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