Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_M15
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 38 0.007
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 38 0.013
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.013
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.013
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.013
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 38 0.013
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 36 0.029
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 36 0.051
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.20
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.20
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.20
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 33 0.20
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.20
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 33 0.27
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.27
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.36
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.47
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.47
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 32 0.62
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 32 0.62
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 31 0.83
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 31 0.83
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 1.4
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 30 1.9
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 30 2.5
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 30 2.5
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 29 4.4
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 5.8
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 5.8
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 5.8
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.8
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 28 7.7
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRI 262
T +A +E +S S + LL +++ SPPD ++ ++ + L H I E +++
Sbjct: 56 TVGVAEFSEQYQGSS-SRLTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQV 114
Query: 263 LADLQMNWIDKRLSWNAGGM-GLQH 334
L + W D LSW G++H
Sbjct: 115 LVYIVQQWTDASLSWKVEEFRGIKH 139
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 316
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 GMG 325
G
Sbjct: 130 LFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 316
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 GMG 325
G
Sbjct: 130 LFG 132
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 316
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 GMG 325
G
Sbjct: 130 LFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 316
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 GMG 325
G
Sbjct: 130 LFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 316
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 GMG 325
G
Sbjct: 130 LFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 316
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 317 GMG 325
G
Sbjct: 130 LFG 132
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 164 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 313
YD E+P + L +L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 143 IDSLLATYDRESP----PDSKIVVNLTL---HLRHANIRESESTVRILADLQMNWIDKRL 301
+ + A +D P PD+ N TL +L+ + E E V ++ +L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 302 SWNA 313
SWNA
Sbjct: 110 SWNA 113
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 313
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 140 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 305 W---NAGGMGLQHL 337
W N GG+ + ++
Sbjct: 90 WDPVNYGGVNVLYV 103
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAG-DYALRARVSNNGSVSWD 458
G + V E +W PD+VL N A + + +A + G V+W+
Sbjct: 97 GVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTWE 142
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 140 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 305 W---NAGGMGLQHL 337
W N GG+ + ++
Sbjct: 90 WDPVNYGGVNVLYV 103
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAG-DYALRARVSNNGSVSWD 458
G + V E +W PD+VL N A + + +A + G V+W+
Sbjct: 97 GVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTWE 142
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 140 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 305 W---NAGGMGLQHL 337
W N GG+ + ++
Sbjct: 90 WDPVNYGGVNVLYV 103
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAG-DYALRARVSNNGSVSWD 458
G + V E +W PD+VL N A + + +A + G V+W+
Sbjct: 97 GVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTWE 142
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSK--IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+I+ L++ Y RE P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 305 W 307
W
Sbjct: 85 W 85
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 AAECENATSL----SLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA-NIRESESTVRI 262
A CEN +L S +++ + YDR P ++VN+T+ L ++E++
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 263 LADLQMNWIDKRLSWN 310
+ W D RLSW+
Sbjct: 117 VISHTQRWYDGRLSWD 132
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 179 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGM-GLQHL 337
PP +I + L++ ++ + E E L D + +W D RLSW+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 345 SSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSV 449
+S +LWRPDV+L N+ + + Y+ R VS+NG V
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 197 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 310
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 197 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 310
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
G V S+ +W PDVVL N A G+Y + +A+++ NG+V W
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
G V S+ +W PDVVL N A G+Y + +A+++ NG+V W
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/79 (20%), Positives = 32/79 (40%)
Frame = +2
Query: 101 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQM 280
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 281 NWIDKRLSWNAGGMGLQHL 337
+W D +SW+ GL L
Sbjct: 114 SWNDTMVSWDKEQWGLSWL 132
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 179 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 310
PP +++ + + + L+ ++ E E V L D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 310
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 164 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 313
YD ++P + L L+ + E V ++ ++ W D RLSWNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNA---GGMGLQHLAG 343
++ E + + + L +W+D RLSWN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V S+R+W PD+VL NA + V ++G V+W
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTW 175
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V S+R+W PD+VL NA + V ++G V+W
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTW 175
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 354 RLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSW 455
++WRPD++L N+A+ + V N G V+W
Sbjct: 48 QIWRPDILLYNSASEDFDSSFKSNEVVYNTGEVNW 82
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 354 RLWRPDVVLLNAAATT--AGDYALRARVSNNGSVSW 455
R+W+PD++L+N A A + V+++G+V+W
Sbjct: 193 RIWKPDIILVNNAIREYYASLVSTDVMVTSDGNVTW 228
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 116 ENATSLS-LMIDSLLATYDRESPPDSKIVVNLT-LHLRHANIRESESTVRILADLQMNWI 289
E+A L+ L I +A+ + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 290 DKRLSWN 310
D RL WN
Sbjct: 93 DDRLMWN 99
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 LSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHANIRESESTVRILADLQMNWIDK 295
+S ++++LL Y++ P + V +L R ++ E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 296 RLSWNAGGMG 325
+L+WN G
Sbjct: 89 KLTWNPTDWG 98
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+WG ++ + S+++W PD+VL NA A++ ++G V W
Sbjct: 96 DWGGVEYIHIPSDQIWIPDIVLYNNADGEPHITITSLAKIDHHGRVVW 143
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 345 SSERLWRPDVVLLNAAA 395
SS+ +W+PDV+L N+AA
Sbjct: 105 SSDHIWKPDVLLYNSAA 121
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 110 ECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE-SESTVRILADLQMN- 283
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 284 -WIDKRLSW 307
W D RLS+
Sbjct: 68 IWQDPRLSF 76
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 212 LHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 310
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALR-ARVSNNGSVSW 455
G T + S+ +W PD+VL N AA L A V+ G+V W
Sbjct: 108 GLKTLHIPSDFIWTPDLVLYNNAAGDPDITILTDALVTFEGNVYW 152
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 310
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALR-ARVSNNGSVSW 455
G T + S+ +W PD+VL N AA L A V+ G+V W
Sbjct: 108 GLKTLHIPSDFIWTPDLVLYNNAAGDPDITILTDALVTFEGNVYW 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,523
Number of Sequences: 27780
Number of extensions: 301574
Number of successful extensions: 964
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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