Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_M11
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 35 0.069
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 33 0.28
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.6
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 3.5
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362... 29 4.6
09_02_0456 - 9525067-9525422,9525679-9528226 29 6.0
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.0
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 29 6.0
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 35.1 bits (77), Expect = 0.069
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 301 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLFELDS 453
G+ PR + D EW N PT+ ++ + +PRE Q+ K +F L+S
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 718 PPQSNSPPGSVXEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 560
PP + GS + +G L+ ER RH + T HA E P R RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 325 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 224
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 718 PPQSNSPPGSVXEPDHAGVLNGDE 647
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>03_05_0934 -
28935728-28935859,28936000-28936122,28936172-28936284,
28936363-28936430,28936517-28936600,28936937-28936980,
28937061-28937204,28937518-28937582,28937722-28937814,
28938132-28938262,28938375-28938394,28938904-28938987,
28939157-28939330,28940106-28940195,28940293-28940364,
28941318-28941365,28941458-28941570,28942786-28942849,
28942943-28943016,28943162-28943201
Length = 591
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 538 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQTGSSFPADSPKPVP 398
+ +GFS TI R+D ++ L P G+ PA P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347
>09_02_0456 - 9525067-9525422,9525679-9528226
Length = 967
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 834 GFPVXRVLNIGSXRFALCSRGFLSSVSGLRHLGIX*QMYRPSQIP 700
GFP VLN+ + GFL++V+ L+ L + + PS +P
Sbjct: 151 GFPSLAVLNLIQNLVSGAFPGFLANVTALQELLLAYNSFSPSPLP 195
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 631 TTXHAWNETPCARRYY 584
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 81 RNRHDLTARKIRGR-PENAGPDPVRNP 4
R +H TA ++ PEN GP PV +P
Sbjct: 238 RKQHKQTANSVQNTGPENVGPKPVNSP 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,028,336
Number of Sequences: 37544
Number of extensions: 524670
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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