Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_M07
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    78   2e-15
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    29   0.58 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.3  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.1  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    25   9.4  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 50/150 (33%), Positives = 73/150 (48%)
 Frame = +3

Query: 36  DDIAYTLNLRGSDIEYNPVFFSYLIVMETNVVLYWGDGQLPPSVTDHLREEGVESIEGKP 215
           D++A+  NLRG+D+ YNPVFF+Y +V      LY  + ++ P V+ HL  +G   I   P
Sbjct: 199 DEVAWLYNLRGADVPYNPVFFAYSLVTLDEAFLYVDERKVTPEVSKHL--DGFVKI--LP 254

Query: 216 YGDILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAASGSDVLKRPIDLISEVSPVKL 395
           Y  +    K     L+  G      W           A S  +    PI     +SP+  
Sbjct: 255 YDRVFSDAKN--SNLTRIGISSKTSWCI---------ATSFGETKVMPI-----LSPISQ 298

Query: 396 AKLVKNEIXLQGFRNCHIXDGXAVVRFFRW 485
           AK +KN+  L+G + CHI DG A+V +F W
Sbjct: 299 AKGIKNDAELKGMKECHIRDGCALVEYFAW 328


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 225  ILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAASGSDVLKRPIDLI 371
            ++EGL+++   ++ +GDG +       AN       SG++V K   D+I
Sbjct: 865  LIEGLQKLGNVVAVTGDGTNDAPALKKANVGFSMGKSGTEVAKEASDII 913


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 162 SVTDHLREEGVESIEGKPYGDILEGLKEMAREL 260
           S  D LREE +E  EG   G+I++    M  EL
Sbjct: 780 SAFDQLREEFMEVAEGTLLGEIIQSAPNMKEEL 812


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 108 IVMETNVVLYWGDGQLPPSVTDHLRE 185
           I+ + +V +Y G G L PS+ D+ RE
Sbjct: 155 ILPQPDVFIYQGSGSLRPSIIDYPRE 180


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 174 HLREEGVESIEGKPYGDILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAAS 335
           H+ EEG   ++GK        ++   + L+  GD    I++ NDA    HRA S
Sbjct: 124 HIEEEGSAKVDGKKVKADASAVEAFRKSLTSLGD----IFV-NDAFGTAHRAHS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,410
Number of Sequences: 5004
Number of extensions: 42378
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)