Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_M06
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           31   0.83 
07_03_0214 - 15250941-15251181,15251237-15251550                       30   2.5  
04_01_0041 - 464695-464850,467485-469029                               30   2.5  
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820...    29   3.3  
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    29   3.3  
09_04_0506 - 18188785-18190599                                         29   5.8  
01_05_0227 - 19512866-19514983                                         29   5.8  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -2

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>07_03_0214 - 15250941-15251181,15251237-15251550
          Length = 184

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = -1

Query: 675 GFNPGANSF*YGVQGIDGNGC*VWGGWCMEFGDLVIGLM*PRSPGEGGLMHKGETANSNA 496
           G   GA    YGV  +  +G  VWGG     G  +  L    +P EG  M + E +   A
Sbjct: 54  GIGSGATVTGYGVPDMGPSGGVVWGGGAAR-GAAMTRLGRLGAPMEGSSMERREVSMGTA 112

Query: 495 RG 490
           RG
Sbjct: 113 RG 114


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 238 RLITPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKI 414
           +LI+ F R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++
Sbjct: 39  KLISVF-RPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRL 97

Query: 415 PVTVD 429
            V +D
Sbjct: 98  AVPLD 102


>03_05_0824 +
           27980191-27980243,27980633-27980671,27980974-27982023,
           27983097-27983262,27983439-27983549,27983637-27983688,
           27984691-27984859,27985604-27985883
          Length = 639

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 400 PSLKIPVTVDL--CWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSR--LHQP 567
           P  KIP  +++  C T+ D T       ++ S+ +ITIG L L+ +    WR R  LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSA-----SSSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274

Query: 568 DHQIPEFHTPTTPD 609
             +I    TP   D
Sbjct: 275 -RRISNGTTPVFDD 287


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
           TE  +N V V  L   SS   GY D  + ++   V      +  K+ V +D    TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224

Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
           +  +N+L  P        G  L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 566 PITKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPG 667
           P+   PN +H PPQ   P  + P  P   +  PG
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG 153


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,217,963
Number of Sequences: 37544
Number of extensions: 465818
Number of successful extensions: 1384
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)