Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_M05
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.28
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 29 0.65
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.6
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.6
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 26 6.1
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 26 8.1
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 8.1
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 380
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.65
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 633 ILXSITKSHFVTXCASXXPNLHVQVCMSLG 544
+L S+ K H +T CA PN + + + +G
Sbjct: 171 VLISVAKGHLMTLCAGLDPNRFLPIVLDVG 200
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 856 GRGXKAGXGGXXGRGPXGXXGPXAGXXXXGGGFXG 752
G G G G G GP G G G GGF G
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 850 GXKAGXGGXXGRGPXGXXGPXAGXXXXGGGFXG 752
G + G GG G GP G G G GGF G
Sbjct: 232 GFEGGPGGFGG-GPGGFGGGLGGFGGGPGGFGG 263
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 747 SXPXNPPPXXXXPAXGPWXPXGPLPXCPPXPAXXP 851
S P PP PA P P P P PP PA P
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAP--PPAPAPAP 484
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 819 AGAPXAPXGPXPAXGXPGXGSPGKXS 742
AG P AP P PA P +PG S
Sbjct: 1725 AGPPSAPPPPLPASSAPSVPNPGDRS 1750
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +3
Query: 741 QXSXPXNPPPXXXXPAX--GPWXPXGPLPXCPPXP 839
Q S P PPP P P P GP P PP P
Sbjct: 1701 QMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPP 1734
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 357 FPCVPTQSFVDPIHLKICQYPHGGL 283
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 526 RNWSANVQALYPGDGAVIRYTGAESVVPRRWLQ 428
RNW +Q L P D +RY +S + + WLQ
Sbjct: 158 RNW---IQHLAPFDYLPVRYANVQSNLIKYWLQ 187
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 42 GFTRDSFNRSVVIKCRRLILFLLPVSPHLCYS 137
GF RD FN I C L+ F + + C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 855 GGAXRXAPGGXXAGAP-XAPXG 793
GGA APGG GAP AP G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGG 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,798
Number of Sequences: 5004
Number of extensions: 62464
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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