Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_M05
(873 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 49 5e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 4e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 6e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 9e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 9e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.005
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 31 0.014
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 30 0.032
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 27 0.30
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 27 0.30
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 27 0.30
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 25 1.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 1.2
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 8.5
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.2 bits (112), Expect = 5e-08
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = +1
Query: 133 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 291
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 292 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 423
+ L+ W D + W+ E+G T L V SE +W PD+VL N
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 458 RARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
+A + G V W + + +P D QTC KFGS
Sbjct: 124 KAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGS 165
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.6 bits (103), Expect = 6e-07
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Frame = +1
Query: 121 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 279
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 280 SESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 423
T + ++ W D +L WN ++G T V SE +W PD+VL N
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
Score = 25.8 bits (54), Expect = 0.52
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 458 RARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
+A + + G V W + + + +P D QTC KFGS
Sbjct: 124 KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGS 165
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 151 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 315
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 316 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 417
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.2 bits (97), Expect = 3e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +1
Query: 151 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 309
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 310 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 423
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
Score = 29.9 bits (64), Expect = 0.032
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 452 ALRARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
A +A ++ G V W + + + +P D QTC KFGS
Sbjct: 126 ATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 157 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 324
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 325 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 423
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 32.7 bits (71), Expect = 0.005
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
R+ +G V + RL I M +N+P D Q C +FGS
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.3 bits (95), Expect = 6e-06
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +1
Query: 178 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 342
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 343 WNAGEWGCSTWL-VSSERLWRPDVVLLN 423
WN E+G L V SE +W PD+VL N
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYN 124
Score = 28.3 bits (60), Expect = 0.098
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 458 RARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
+A + G VSW + + + +P D Q+C KFGS
Sbjct: 137 KATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGS 178
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +1
Query: 178 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 342
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 343 WNAGEWGCSTWL-VSSERLWRPDVVLLN 423
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
Score = 28.3 bits (60), Expect = 0.098
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 458 RARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
+A V +G V W + S+ + +P D+QTC K GS
Sbjct: 132 KATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +1
Query: 178 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 342
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 343 WNAGEWGCSTWL-VSSERLWRPDVVLLN 423
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
Score = 30.3 bits (65), Expect = 0.024
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 452 ALRARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
A +A + + G V W + + + +P D QTC KFGS
Sbjct: 130 ATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGS 173
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.3 bits (90), Expect = 2e-05
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 178 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 342
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 343 WNAGEW-GCSTWLVSSERLWRPDVVLLN 423
WN E+ G ++ +LW+PD+++ N
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.3 bits (90), Expect = 2e-05
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 178 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 342
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 343 WNAGEW-GCSTWLVSSERLWRPDVVLLN 423
WN E+ G ++ +LW+PD+++ N
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYN 145
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 423
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
Score = 24.6 bits (51), Expect = 1.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 443 GDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
G Y V+++GS ++ + M +P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGS 131
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 423
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 423
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 423
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 423
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
Score = 24.6 bits (51), Expect = 1.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 443 GDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
G Y V+++GS ++ + M +P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGS 131
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 423
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 232 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 408
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 409 VVLLN 423
+L N
Sbjct: 92 TILYN 96
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 467 VSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
VS+ G V W+ + + + +P D Q C K+ S
Sbjct: 113 VSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWAS 151
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 38.3 bits (85), Expect = 9e-05
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +1
Query: 112 RFLLTCAIASAAE--CENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-N 270
R+ L AIA AA + +++ LL TY+ E P ++ +V++ L L +
Sbjct: 3 RWTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIID 62
Query: 271 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 423
+ E + L++ W D + WN ++G L + RLW+PDV++ N
Sbjct: 63 VDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYN 114
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.5 bits (83), Expect = 2e-04
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 229 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 402
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 403 PDVVLLN 423
PD+VL N
Sbjct: 111 PDIVLFN 117
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 449 YALRARVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
Y + NG V W+ + ++ +P D QTC KFGS
Sbjct: 127 YKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGS 171
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.7 bits (71), Expect = 0.005
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGSXDAQXVTKWDFVIDXRIY 637
R+S +G + + RL I M+ N+P D Q+C GS V + + R++
Sbjct: 143 RISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSCKCIYVQSINLCMAGRLF 200
Score = 32.3 bits (70), Expect = 0.006
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +1
Query: 166 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 330
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 331 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 423
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.014
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 157 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 324
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 325 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 423
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTC 565
R+ ++GS++ RL I+ M +P D Q C
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.032
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 157 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 324
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 325 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 423
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTC 565
R+ ++GS++ RL I+ M +P D Q C
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 152
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 467 VSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
V ++GSVS + + + +WP D C FGS
Sbjct: 151 VFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGS 189
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 26.6 bits (56), Expect = 0.30
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
R+ NGSV + R+ ++ M +P D Q C+ + S
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 26.6 bits (56), Expect = 0.30
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
R+ NGSV + R+ ++ M +P D Q C+ + S
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 26.6 bits (56), Expect = 0.30
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTCTCKFGS 583
R+S +GSV++ R + M +P D Q CT + S
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES 181
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 464 RVSNNGSVSWIKRLDISTPISMQXDNWPNDMQTC 565
R+ ++GS++ RL I+ M +P D Q C
Sbjct: 58 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 91
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.6 bits (51), Expect = 1.2
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 767 PGXPXAGXGPXGAXGAPAXXPPGAXLXAPPXDXP 868
P P G P + G P PPG APP P
Sbjct: 31 PQAPQRGSPPNPSQGPPPGGPPG----APPSQNP 60
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = +2
Query: 752 PGEPXPGXPXAGXGPXGAXGAPAXXPPGAXLXAP 853
P P P G P G GAP P + +P
Sbjct: 34 PQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -1
Query: 813 APXAPXGPXPAXGXPGXGSPG 751
AP P P+ G P G PG
Sbjct: 33 APQRGSPPNPSQGPPPGGPPG 53
Score = 21.8 bits (44), Expect = 8.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 375 PSAAAPFPCVPTQS 334
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 174 GQ*CCVFAFCRTSYSTSEEKPVTR 103
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,828
Number of Sequences: 438
Number of extensions: 5748
Number of successful extensions: 78
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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