Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L21
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.20 
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    31   0.26 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    29   1.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.4  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   3.2  
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    27   3.2  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   3.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.2  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   5.6  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   7.4  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    25   9.8  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   9.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 23/89 (25%), Positives = 42/89 (47%)
 Frame = +3

Query: 468  DSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREVHSRLSDARNDNWHSY 647
            DS   I+LS DLR +  +R +A+   +    +S   +++R + E H+     RND  H  
Sbjct: 2205 DSISAIQLSKDLREIFHLRISALDILNSSTINSLIRKLKRRRTESHT-----RNDKIHES 2259

Query: 648  LEQLAPSHQAYWRLARTLKSETIATMPPL 734
            ++Q     +    + +TL  +    +P L
Sbjct: 2260 IDQFFKDIRKQILIPQTLCDKIEQILPCL 2288


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = +3

Query: 360 GPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRL-----SPDLRNLLRVR 524
           GP SN        S +  TDH++   I   KE+D+     + +      SP+   + + R
Sbjct: 29  GPPSNFKNNSLTSSTHSSTDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNKAPIQKSR 88

Query: 525 NAAIRAYDRLPTHSNRIRMRRLQREVHSRLSD 620
            ++++++  L T S +  ++R +R+   R  D
Sbjct: 89  GSSLKSH--LETESQQTPVKRRRRKATIRNVD 118


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 348 ILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFH 479
           +L Y  + NP  +D  + INI+   +S   + S K  +  + FH
Sbjct: 777 VLKYTDEGNPDKQDIPKVINIVRGFLSRLNVESGKAENKFNLFH 820


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 522  RNAAIRAYDRLPTHSNR-IRMRRLQREVHSRLSDARNDNWHSYLEQ 656
            +NAA+   D L THS R +   RL      R +   ++ WH  LE+
Sbjct: 1790 QNAALAIMDSLKTHSPRLVEQARLVSHELIRAAILWHEQWHEGLEE 1835


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 366 DSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLS 494
           D +P+ ++  + ++I+T HI+  + + SK+         IRLS
Sbjct: 110 DLSPNKQEDKKDLHIVTQHITPQLTKESKKGSSSAMDKSIRLS 152


>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 134 RITCWSWGTDYFKGEVVYKR 75
           R+  W W  DY +G+VV  R
Sbjct: 62  RVLLWKWNKDYKRGDVVILR 81


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 270 HNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESIN--IITDHISSAIIR 443
           HN +TV  T     +  + L   + P++    D  PSP D +   N   +TD++  ++  
Sbjct: 40  HNVITVLDTPQRSTQCDSLLKSFSTPLVSGSEDVLPSPRDALNITNKKSVTDNLLLSLTS 99

Query: 444 SSKEVD 461
           S++  +
Sbjct: 100 SNQSTN 105


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 363  PDSNPSPEDTVESINIITDHISSAIIRSSKEVDVE-DSFHRIRLSPDLRNL 512
            P   P P D + +  ++  H    I+ S KE+  E D   R+ L   L+ L
Sbjct: 865  PIPEPIPVDAMPTFTVLVPHYGEKILLSLKEIIREQDKLSRVTLLEYLKQL 915


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 465 EDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRR-LQREVHSRLSDARNDNWH 641
           ED++ R R S    +    R++  R+ +  P  S   R    LQ    SR S AR+  W 
Sbjct: 11  EDNYSRDRRSRFTEDSYSRRDSQ-RSGNEAPRESRYYRKEEHLQERSRSR-SPARDSRWK 68

Query: 642 SYLEQLAPSH 671
           S     AP+H
Sbjct: 69  SSSSGFAPAH 78


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
 Frame = +1

Query: 304 IGISWA------RA*PTPLRQSSLTARIRIHPPRTPSNPLTSL-PITSLPRSLDLLKKSM 462
           IG+ WA         PT + +S++T   +      P NP+T+L  +   P ++ LL+   
Sbjct: 358 IGVGWASNWQYTNQAPTQVFRSAMTVARKFTLRDVPQNPMTNLTSLIQTPLNVSLLRDET 417

Query: 463 WRTASTASDCPPILG 507
             TA   +    + G
Sbjct: 418 LFTAPVINSSSSLSG 432


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
 Frame = +3

Query: 438 IRSSKEVDVEDSFHRIRLSPD------LRNLLRVRNAAIRAYDRL--PTHSNRIRMRRLQ 593
           I+  +  +VEDS +++ LSP       L N  +VR +  +A  R   P  S  I++  L+
Sbjct: 3   IKGGRRGNVEDSLNKLSLSPPDNNSSFLSNHFQVRKSYSQAPARTLKPFASEDIKILLLE 62

Query: 594 REVHSRLSDARNDNW 638
               S LS+ +++ +
Sbjct: 63  NVNQSALSNLKDEGY 77


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147 LRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPHNP-VTVTRTMVDW 308
           LRP+    + LRNV  R  + E +++ +++ R    ++ RP++P +T+    + W
Sbjct: 21  LRPA--GRSTLRNVWRRSIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTW 73


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
 Frame = +3

Query: 366 DSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAY 545
           D  PSP+DTV S          + +R  K   + +S +    SPD R  +R+    IR  
Sbjct: 544 DIGPSPDDTVGSQKFREFWGEVSELRKFKNGSIAESVYWECSSPDER--IRIPQRIIRHI 601

Query: 546 DRLPTHSN---RIRMR--RLQREVHSRLSDARNDNWHSYLEQLAPSHQA 677
                 +N   R+  R  + +  VHS++S    D ++ Y+  +   ++A
Sbjct: 602 LNRHLGNNVGDRVSFRNEKFRVYVHSKIS-PNTDTYNEYVPVMEAYNEA 649


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 379 PPRTPSNPLTSLPITSLPRSLDL--LKKSMWRTASTASDCPPILGIS 513
           P R  S P  S  + S+P S     +      T+S ++D P +LG S
Sbjct: 106 PTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,671
Number of Sequences: 5004
Number of extensions: 72439
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)