Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L21
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 33 0.36
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 31 1.1
05_02_0049 - 6083364-6084111,6084140-6084246 30 1.9
11_03_0021 + 9010846-9011672,9011753-9013700 30 2.6
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 29 3.4
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 29 3.4
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75... 29 4.5
09_04_0416 - 17399059-17399777,17400560-17400704 29 5.9
06_03_1302 - 29163974-29166907 29 5.9
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496... 28 7.8
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 7.8
02_05_1027 - 33602170-33602622,33602912-33603013 28 7.8
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +2
Query: 89 PHL*NSRSPNSNMLSV*HRAPSEHY--RPGIA*ERNSALAFHRSNV-----RARLRPPTC 247
P L + R P+S+ + HRA + H RP + A R+NV RAR PP
Sbjct: 2 PLLLHPRFPSSHAAACAHRAAAAHRDARPALRLPELHATRRRRNNVACRATRAREAPPQQ 61
Query: 248 RYAARSPSQPSHCYEDH 298
+ A + S+ +H Y DH
Sbjct: 62 QNTAAALSKEAHKYFDH 78
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 194 ALAFHRSNVRARLRPPTCRYAARS 265
A AF + ++ +RPPTCRYA RS
Sbjct: 443 AFAFIVATLKDPMRPPTCRYALRS 466
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 292 GPWWIGISWARA*PTPLRQSSL-TARIRIHPPRTPSNPLTSLPITSLPRSLDL 447
G W SW + P+P +S+ TAR P PS LT+L ++S P S L
Sbjct: 58 GRCWSSSSWRSSPPSPAARSTCSTARTAPASPSRPSK-LTALNLSSSPTSPSL 109
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 471 SFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQR 596
S + IRL+ DL+ L ++R+ AI D + T S+ +R R + R
Sbjct: 677 SSNSIRLAGDLKCLKKLRDLAIAVEDPVGTKSSTLRYREVVR 718
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +1
Query: 337 PLRQSSLTARIRIHPPRTPSNPLTSLPITSLPRSLDLLKKSMWRTASTASDCPP 498
PL LT R R PP P P LP L L + ++ + AS C P
Sbjct: 557 PLTNRRLTRRCRHRPPSKPLPPPPPLPSKPLLPGLPTIIEATAKLASHCRSCYP 610
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 29.5 bits (63), Expect = 3.4
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 420 HISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQRE 599
HI + I SSK D+E SF ++ R I + R+ + +R RR +R+
Sbjct: 322 HIDAGIDSSSKHADLEKSFG-----------VKARIPGISFWSRMIPNPSR---RRYRRK 367
Query: 600 VHSRL-SDARNDNWHSYLEQLAPSHQAYWR 686
HS+L SD N + L + A + AY++
Sbjct: 368 AHSKLISDTDNSSQQRILRRSAYAAVAYFQ 397
>09_01_0041 +
746494-746691,747301-747495,750509-750631,751457-751636,
752772-753058,754343-754907
Length = 515
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 576 RMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETIATMPPLVRPSGQP 755
R + L E + D S+++++A + + +W A +S+T+++ L GQP
Sbjct: 372 RRQALGEERDGLAAGVEGDGIGSWVDRVAMARRRHWSDALPARSDTLSSGSGLPGAGGQP 431
Query: 756 P 758
P
Sbjct: 432 P 432
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 386 LGGWIRIRAVREDWRSGVG 330
L GW R R RE W+SG+G
Sbjct: 255 LYGWKRKRGEREKWKSGIG 273
>06_03_1302 - 29163974-29166907
Length = 977
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Frame = +3
Query: 342 PPILPYGPDSNPSPEDTV---------ESINIITDHISSAIIRSSKEVDVEDS-FHRIRL 491
P ILP+ P S+ +DTV E NI+ + I S +++ + + +++
Sbjct: 149 PAILPFTPHSHCEEQDTVPIGFMEKIEELKNILLRDAAPVIFVSGEQLSGKTTLMNQVYK 208
Query: 492 SPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREVHSRLSDA 623
D+RN ++R+ + R + R ++ +RE +S DA
Sbjct: 209 DIDVRNHFKIRSKVDMSKTRCLSDLLRAVLKHEERETNSMYPDA 252
>08_01_0999 +
10145782-10146392,10147665-10147734,10149409-10149643,
10149726-10149799,10149881-10149955
Length = 354
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 337 PLRQSSLTARIRIHPPRTPSNPLTSLPITSLPRSL 441
P SS ++ + + P PS+PL +LP+ S SL
Sbjct: 41 PAAPSSSSSHLHLLPLHDPSSPLAALPLPSRAASL 75
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 267 GDRAA*RQVGGLSRALTLLRWNASAEL 187
G AA R GG S L LLRW +SAEL
Sbjct: 12 GAAAAVRWRGGESLLLLLLRWPSSAEL 38
>02_05_1027 - 33602170-33602622,33602912-33603013
Length = 184
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 PPTCRYAARSPSQPS-HCYEDHGGLE 310
PPT Y +R+P Q S H +E HG L+
Sbjct: 124 PPTVEYYSRNPHQNSHHDHEQHGVLK 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,277,027
Number of Sequences: 37544
Number of extensions: 603050
Number of successful extensions: 1937
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1933
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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