Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L21
         (821 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117315-1|AAI17316.1|  433|Homo sapiens RBMS3 protein protein.        30   8.8  
AF023259-1|AAC63910.1|  411|Homo sapiens RNA-binding protein pro...    30   8.8  

>BC117315-1|AAI17316.1|  433|Homo sapiens RBMS3 protein protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +3

Query: 234 DHRPVVMQLGRPHNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINII 413
           DH P+ MQ      P+T     +     GT +  AAP    Y P   P P   V    ++
Sbjct: 335 DH-PMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVSIEGVV 393

Query: 414 TDHISSAIIRSSKE 455
            D     +  SS++
Sbjct: 394 ADTSPQTVAPSSQD 407


>AF023259-1|AAC63910.1|  411|Homo sapiens RNA-binding protein
           protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +3

Query: 234 DHRPVVMQLGRPHNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINII 413
           DH P+ MQ      P+T     +     GT +  AAP    Y P   P P   V    ++
Sbjct: 313 DH-PMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVSIEGVV 371

Query: 414 TDHISSAIIRSSKE 455
            D     +  SS++
Sbjct: 372 ADTSPQTVAPSSQD 385


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,316,528
Number of Sequences: 237096
Number of extensions: 2911583
Number of successful extensions: 7963
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7961
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)