Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L21
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.37 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.64 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.85 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.85 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.85 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.85 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.85 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 135 YNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDH 239
           Y+I LRP+     LL  + L + S +A+SE++ D+
Sbjct: 48  YDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDY 82


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 552 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 647
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSY 245


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 552 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 647
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 552 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 647
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 552 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 647
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 552 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 647
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 552 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 647
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 327 LADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLR 506
           LA  APP+LP     N    D +E  +  TD I      S  +++   +  R   S D+R
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 327 LADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLR 506
           LA  APP+LP     N    D +E  +  TD I      S  +++   +  R   S D+R
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 327 LADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLR 506
           LA  APP+LP     N    D +E  +  TD I      S  +++   +  R   S D+R
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 576 RMRRLQR--EVHSRLSDARNDNWHSY 647
           R R  QR    HSR  D+R+++ +SY
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 452 RSRCGGQLPPHQTVP 496
           RS  GGQLPP    P
Sbjct: 402 RSPAGGQLPPSAGAP 416


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = +3

Query: 87  DLTFEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRP------- 245
           +LTFE    P      +NI+     + +++++ V+  L  ++ + E + D  P       
Sbjct: 113 NLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQ 172

Query: 246 -VVMQLGRPHNPV-TVTRTMV 302
            VV  +  P  PV TVT   V
Sbjct: 173 TVVASMDPPEPPVPTVTSACV 193


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 203 TQAQS-YVPKQCQVYSARTERDVIR 132
           T A+S ++P++ ++YS  T +DV R
Sbjct: 661 TPAESTFIPEERRIYSPITFQDVAR 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,402
Number of Sequences: 438
Number of extensions: 5488
Number of successful extensions: 24
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)