Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L19
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 354 9e-99
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 204 1e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 186 2e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 141 9e-35
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 105 9e-24
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 103 2e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 96 4e-21
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 2e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.005
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.079
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 32 0.079
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.079
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.42
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.56
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.0
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 27 3.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.2
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 5.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 5.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.2
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 5.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 9.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 354 bits (870), Expect = 9e-99
Identities = 160/175 (91%), Positives = 168/175 (96%)
Frame = +2
Query: 107 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSK 286
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSY GDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 287 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKANREKMTQ 466
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNEL VAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 467 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 631
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +1
Query: 649 GRDLTDYLMKILTERGYSFXTTXEREIXRNIKEXLXYVAL 768
GRDLTDYLMKIL ERGY+F TT EREI R+IKE L YVAL
Sbjct: 182 GRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 204 bits (498), Expect = 1e-53
Identities = 90/169 (53%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSKRGILTL 304
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD + G EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 305 KYPIEHGIVTNWDDMEKIWHHTFYN-ELHVAPEEHPVLLTEAPLNPKANREKMTQIMFET 481
+ PIE GI+ NW DME+IW + + + +L+ PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 482 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 628
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 649 GRDLTDYLMKILTERGYSFXTTXEREIXRNIKEXLXYVA 765
GRD+TDYL L + G+ ++ E+EI R IKE YVA
Sbjct: 187 GRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVA 225
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 186 bits (454), Expect = 2e-48
Identities = 86/174 (49%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYAGDEAQSK 286
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD GDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 287 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKANREKMTQ 466
R +L +KYP+E+GI+ ++++M ++W +TF+ +L + P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 467 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 628
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H +
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 649 GRDLTDYLMKILTERGYSFXTTXEREIXRNIKEXLXYVA 765
GRD T YL+ +L +GY+F T + E R +KE L YV+
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVS 220
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 141 bits (342), Expect = 9e-35
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 32/200 (16%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 253
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 254 ------DSYAGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELHVAPEEHPV 412
D + G++A K +L YPI HG + NWD ME+ W + + L PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 413 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 568
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 569 GDGVSHTVPIYEGYALPHAI 628
GDGV+H +P+ EGY + +I
Sbjct: 187 GDGVTHIIPVAEGYVIGSSI 206
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 105 bits (251), Expect = 9e-24
Identities = 61/169 (36%), Positives = 91/169 (53%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSKR 289
+EV+A+V+D GS + GF+G+D P+ V PS G G + G++ Y +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-FSDGRRL-FGEEYIY-----KSNP 61
Query: 290 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKANREKMTQI 469
G + +K I +G V NWD +W + +L P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 470 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 616
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 103 bits (248), Expect = 2e-23
Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSKRGILTL 304
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + G++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 305 -KYPIEHGIVTNWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKANREKMTQIMFET 481
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 482 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 607
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 96.3 bits (229), Expect = 4e-21
Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSKR 289
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ Y DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 290 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKANREKMT 463
I + +K +GI+ +W+ W +L V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 464 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILASGL 643
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.0 bits (124), Expect = 2e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +2
Query: 311 PIEHGIVTNWDDMEKIWHHTFYNELHVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 478
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 479 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 607
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.3 bits (80), Expect = 0.005
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 6/174 (3%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSKRGILTL 304
+V+DNG+ KAGFAG P+ + R + G + + G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 305 KYPIEH--GIVTNWDDMEKIWHHTFYNELHVAPE--EHPVLLTEAPLNPKANREKMTQIM 472
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 473 FETFNTPAMYVAIQAVLSLYASGRTTGIVLD--SGDGVSHTVPIYEGYALPHAI 628
FE F A A L + G T D +G + I GY+ H I
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHII 171
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.079
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +2
Query: 371 FYNELHVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 514
+Y L+ E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 32.3 bits (70), Expect = 0.079
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 170 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYAGDEAQSKRGILTLKYP 313
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.079
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 495 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 629
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 492 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 629
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 492 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 629
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 492 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 629
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 471 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 629
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.97
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 471 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 629
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -3
Query: 267 PA*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 106
P S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 483 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 629
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/66 (25%), Positives = 23/66 (34%)
Frame = +3
Query: 474 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRLDLXGS 653
S + P + S C+ T +PP T P ST T +P P G+
Sbjct: 270 STDTNSSPLPTTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327
Query: 654 RPHRLP 671
LP
Sbjct: 328 SSSPLP 333
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 516 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 620
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 564 TPATVSPTPCPSTKDTHSPTPSLRLDLXGSRP 659
TPA +P P P+ K H P P +R + S P
Sbjct: 728 TPAPPTPAPTPAVKH-HPPPPPVRSSISPSMP 758
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 278 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 189
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 516 PCSRCTRPVVPPVSCWTPATVSPTPCPST 602
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 328 DSVFDGVFEGQDTSFALCLISCIRVLL 248
D D +F G D + +CLISC +LL
Sbjct: 129 DPCLDDLFGGYDWAPGICLISCWFILL 155
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 492 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 599
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 413 LLTEAPLNPKANREKMTQIMFETFN 487
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 294 IPLLLCASSPA*ESFCPIPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 118
IP L ++PA +F P P++ +P + T +TA ++SP L P + TN +
Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420
Query: 117 TSSS 106
+SSS
Sbjct: 421 SSSS 424
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 492 PPCTSPSKPCSRCTRPVVPPVSCWTPAT-VSPTPCPSTKDTHSPTPSLRL 638
P SP + SR + +PP +P S TP P SP PSL++
Sbjct: 564 PSALSPLRIRSRPSPLSLPPEPLLSPTIDYSATPFPLEPPPESPGPSLQI 613
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 246 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 154
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 513 KPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRLDLXGSRPHRLPHE 677
KP S+ TRP +P + T +V P P P + T R S + P E
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIPPPSEQSLDTIIYRNPSVSSSQSQEPEE 118
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 152 TYRSHCLLPTRQLLRRTS*ISEI 84
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 531 TRPVVPPVSCWTPATVSPTPCPSTKDT--HSPTPSL-RLDLXGSRPHRLPHEDP 683
T P S TPA V P P PST T + P L +L + + P P P
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSP 886
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 335 NWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKANR 451
N D++ +H+ +LH E+ PV L +PL R
Sbjct: 41 NGDEIALQHNHSSTGKLHAKREKEPVYLMPSPLTDDLKR 79
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 498 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 629
C +PS+ C + PV + T S TP P+T + +PTP+
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPT 865
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 427 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 576
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,671
Number of Sequences: 5004
Number of extensions: 75689
Number of successful extensions: 301
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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