Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L17
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.26 
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    30   0.46 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.4  
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    27   2.4  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   7.4  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   7.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +3

Query: 522 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKXVRA 662
           Y SS     IS +ST   N  FH PT    TS S     A  K V +
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNS 841


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 533 PPSPGDLGYINPIIKSPIPYTNHPRLNIHFHQSPE 637
           PP PGD+ + NP++  P    + P    +F  +PE
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPE 252


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 447
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 448 DVTVEGVNVLATPSSS 495
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 528 SSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 623
           +S PP ++S+         FHTPT P  T +S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLS 151


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 770 IHHSLEIRGRTPLAMPSDEGVRYADGA 690
           IHH++ +R ++P+  P    VR+ D A
Sbjct: 61  IHHAIIVRTKSPVRRPDGRYVRFDDNA 87


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 259  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 372
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 340 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 728 WLKGFAPLFQVNDESQASRLIXRHSXHIP 814
           WL GF+    ++DE +A + I R   + P
Sbjct: 335 WLDGFSYFLSISDEQRALQTIRRGMRYCP 363


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 509 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 375
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +1

Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 456
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 457 VEGVNVLATP 486
                V +TP
Sbjct: 540 YTSTPVTSTP 549


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 764 HSLEIRGRTPLAMPSDEGVRYADGA 690
           H +++ G TP +MPS+    Y +GA
Sbjct: 850 HMVDVGGITPGSMPSNSKAIYEEGA 874


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = +1

Query: 565 PDHQIPDSIHQPPQT*HPFPSIP*TPY*XEFAPGLKPPLSSXAPSAYLTPSSL 723
           P    P S  +PP +  P PSIP  P     +P   PP+ S AP     PSSL
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPP---IPSSL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,006
Number of Sequences: 5004
Number of extensions: 61723
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)