Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L16
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 244 9e-66
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 239 3e-64
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 3e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 2.5
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 27 2.5
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 3.3
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.6
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 244 bits (598), Expect = 9e-66
Identities = 118/193 (61%), Positives = 144/193 (74%)
Frame = +1
Query: 103 SNEEDVTKMLAATTHLGAENVNFQMXTYVYKRRADGTHVIXXRRTWEKLVLAARAVVXIE 282
+ ++D+ +LAA +H+G++N+ +M YV+KRR+DG H+I +TWEKLVLAAR + IE
Sbjct: 13 ATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIE 72
Query: 283 NPDDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 462
NP DV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP
Sbjct: 73 NPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRA 132
Query: 463 DHQPITEASYVNXPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRGVL 642
D Q I EAS+VN PVIALC+TDS L VD+AIP N K SIGL W+LLAREVL LRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192
Query: 643 PVTSAGMLWLICP 681
T+A W + P
Sbjct: 193 SRTTA---WEVMP 202
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 642 SRDQRWDVVVDLSFYRDPEESEKDEQQ 722
SR W+V+ DL FYRDPEE E++E+Q
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 239 bits (585), Expect = 3e-64
Identities = 111/180 (61%), Positives = 138/180 (76%)
Frame = +1
Query: 103 SNEEDVTKMLAATTHLGAENVNFQMXTYVYKRRADGTHVIXXRRTWEKLVLAARAVVXIE 282
+ +ED+ ++LAA H+G++N+ +M YV+KRR+DG H++ +TWEKLVLAAR + IE
Sbjct: 12 ATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIE 71
Query: 283 NPDDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 462
NP DV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP
Sbjct: 72 NPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRA 131
Query: 463 DHQPITEASYVNXPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRGVL 642
D Q I EAS+VN PVIALC+TDS L VDIAIP N K SIGL+W+LLAREVL +RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 642 SRDQRWDVVVDLSFYRDPEESEKDEQQAK 728
SR WDV+ DL FYRDPEE E++E+ K
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.0 bits (99), Expect = 3e-05
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 27/200 (13%)
Frame = +1
Query: 97 SPSNEEDVTKMLAATTHLGAENVNFQMXT--YVYKRRADGTHVIXXRRTWEKLVLAARAV 270
+P ++ + +L++ HLG + T ++Y +R +G H+I +T L A V
Sbjct: 43 APPSQLSLPLLLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVV 101
Query: 271 VXIENPDDVFVISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA-------- 417
I + + + GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 102 RSIAKENGIILFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILC 161
Query: 418 --------------AFREPRLLIVLDPAQDHQPITEASYVNXPVIALCNTDSPLRFVDIA 555
++ P L+++L+P ++ EA + P I + +TD+ R V
Sbjct: 162 KDNRGKLIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYP 221
Query: 556 IPCNTKSSHSIGLMWWLLAR 615
IP N S L+ LL+R
Sbjct: 222 IPANDDSLRCTDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 217 VIXXRRTWEKLVLAARAVVXIENPDDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 393
V+ R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 200 VLMVPM*STCVVPGKNLXWL----LVLSXPSRTPMMCSSSHHGPSVSVLY*SLPR 352
VL V S +VPG L W+ L + +R +C+ S G S VLY L R
Sbjct: 285 VLRVDSFSKLIVPGLRLGWITGNSLFIDRITRYAEVCTESPSGVSQVVLYAILNR 339
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 508 IALCNTDSPLRFVDIAIPCNTKSSHSI 588
+ LC+ +S RF D+A+ NTK +H I
Sbjct: 85 LQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 480 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP 313
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 634 GVLPVTSAGML--WLICPSTVTLKKVKRM 714
G+ P S ++ WL +TVTLKK+K +
Sbjct: 478 GLFPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,860
Number of Sequences: 5004
Number of extensions: 64939
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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