Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L16
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   240   1e-63
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   239   2e-63
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   4.6  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  240 bits (587), Expect = 1e-63
 Identities = 112/180 (62%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
 Frame = +1

Query: 109 EEDVTKMLAATTHLGAENVNFQMXTYVYKRRADGTHVIXXRRTWEKLVLAARAVVXIENP 288
           E+DV  MLAA  HLG +N +FQM  YVYKRR+DG ++I   +TWEKL LAAR +V IENP
Sbjct: 16  EQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENP 75

Query: 289 DDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 468
            D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 76  QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDH 135

Query: 469 QPITEASYVNXPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRG-VLP 645
           QPI E++  N P IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL +RG +LP
Sbjct: 136 QPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILP 195



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +3

Query: 654 RWDVVVDLSFYRDPEESEKDEQQAKEQ 734
           +WDV+VDL FYRDPEE+++ E++A  Q
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  239 bits (585), Expect = 2e-63
 Identities = 111/180 (61%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
 Frame = +1

Query: 109 EEDVTKMLAATTHLGAENVNFQMXTYVYKRRADGTHVIXXRRTWEKLVLAARAVVXIENP 288
           E+D+  MLAA  HLG +N +FQM  YVYKRR DG ++I   +TWEKL LAAR +V IENP
Sbjct: 16  EQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENP 75

Query: 289 DDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 468
            D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 76  QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDH 135

Query: 469 QPITEASYVNXPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRG-VLP 645
           QPI E++  N P IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL +RG +LP
Sbjct: 136 QPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILP 195



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/23 (60%), Positives = 21/23 (91%)
 Frame = +3

Query: 654 RWDVVVDLSFYRDPEESEKDEQQ 722
           +WDV+VDL FYRDPEE+++ E++
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEE 220


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/78 (28%), Positives = 27/78 (34%)
 Frame = +3

Query: 117 CHQNACCNHPSXGRKC*LPDGXLCLQTTC*WYPCDXXASYLGKTCXGCSCCRXHREPR*C 296
           CH   C   P  GR+   P G     +      CD  A+  G TC     C  H+ P  C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378

Query: 297 VRHLITALRSACCTEVCR 350
            R           T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 342 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 449
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,105,940
Number of Sequences: 37544
Number of extensions: 488438
Number of successful extensions: 1125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)